PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01001237001
Common NameLOC100240851, VITISV_030479
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB_related
Protein Properties Length: 157aa    MW: 18110.9 Da    PI: 9.982
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01001237001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.85.1e-1378122347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +W +eE+ l++++  ++G+g+Wk+I+r +  +Rt+ q+ s+ qky
  GSVIVT01001237001  78 PWIEEEHVLFLEGLVKYGKGDWKSISRNFVITRTPSQVASHAQKY 122
                        799***************************99************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.37E-81061IPR009057Homeodomain-like
SMARTSM007170.561163IPR001005SANT/Myb domain
PROSITE profilePS500904.7041361IPR017877Myb-like domain
PROSITE profilePS5129418.58571127IPR017930Myb domain
SuperFamilySSF466891.58E-1473127IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-1674126IPR006447Myb domain, plants
SMARTSM007173.1E-1075125IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-1075122IPR009057Homeodomain-like
CDDcd001677.08E-978123No hitNo description
PfamPF002493.3E-1178122IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MSQFIDYSLS FGSKWNRSGD ILFERAILIF PEETPNRWYK IVTQIPRKSP MDMLEHYIKL  60
IQDIDVIDFG IEKKKGTPWI EEEHVLFLEG LVKYGKGDWK SISRNFVITR TPSQVASHAQ  120
KYFARQRPGN MGKKRKRTSI HDITTDDLPP LGGVTP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132137KKRKRT
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4246781e-143AM424678.2 Vitis vinifera contig VV78X203929.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002265709.21e-106PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H74e-41DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA5AEN31e-105A5AEN3_VITVI; Uncharacterized protein
STRINGVIT_18s0001g01170.t013e-66(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.13e-47MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Velasco R, et al.
    A high quality draft consensus sequence of the genome of a heterozygous grapevine variety.
    PLoS ONE, 2007. 2(12): p. e1326
    [PMID:18094749]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]