PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01000752001
Common NameLOC100257874, VIT_07s0141g00680
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 285aa    MW: 32028.3 Da    PI: 10.4909
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01000752001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.74.2e-32218275359
                        -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYegeHnh+
  GSVIVT01000752001 218 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHP 275
                        9************************9988****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.0E-17170214IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.3E-34204276IPR003657WRKY domain
PROSITE profilePS5081130.458211277IPR003657WRKY domain
SuperFamilySSF1182901.02E-27214276IPR003657WRKY domain
SMARTSM007741.3E-39216276IPR003657WRKY domain
PfamPF031067.1E-28218275IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MVETGEAVVR FNRVVSLLNT GLGHARVRKS KNFQTPLPHN ILLDKPNAKQ DHPSKTFQFL  60
HSSSLEKPIQ EMGPLQLSQL IPSSTNYQFL HHQQQQRLQQ QMKHQADTMY RRSNSGINLN  120
FDSSSCTPTM SSTRSFISSL SVDGSVANLD GNAFHLIGPA RSDQNSFQHK RKCSRGEEGS  180
VKCGSSGRCH CSKKRKHRVK RSIKVPAISN KLADIPPDEY SWRKYGQKPI KGSPHPRGYY  240
KCSSMRGCPA RKHVERCLED PSMLIVTYEG EHNHPRLPSQ SANQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-21209278775WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4849110.0AM484911.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X258458.2, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282258.10.0PREDICTED: probable WRKY transcription factor 21
RefseqXP_010651943.10.0PREDICTED: probable WRKY transcription factor 21
RefseqXP_010651944.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043368e-98WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLF6GXM50.0F6GXM5_VITVI; Uncharacterized protein
STRINGVIT_07s0141g00680.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18171541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-100WRKY DNA-binding protein 21