PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01000141001
Common NameLOC100261250, VIT_07s0129g00330
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family LBD
Protein Properties Length: 229aa    MW: 24833.5 Da    PI: 8.0408
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01000141001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.61.3e-302103197
             DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                        +C++C+vlr++C+++C+l+p++     +++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ r+ +Pv+Gavg++ ++++++
  GSVIVT01000141001   2 SCNGCRVLRKGCSESCILRPCLqwiesAESQGHATVFVAKFFGRAGLMSFISAVPENQRPALFRSLLYEACGRTVNPVNGAVGLLGTGNWHV 93 
                        6*********************9999777889************************************************************ PP

             DUF260  88 eqlkaelall 97 
                        +q++ e++l+
  GSVIVT01000141001  94 CQAAMETVLR 103
                        ****998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.7691107IPR004883Lateral organ boundaries, LOB
PfamPF031956.1E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIESAE SQGHATVFVA KFFGRAGLMS FISAVPENQR  60
PALFRSLLYE ACGRTVNPVN GAVGLLGTGN WHVCQAAMET VLRGGTLRAM PELLNGVSTP  120
ECDEASEAEV TCTDMFKLRD PNSSSRSKVP KRKRLEEASK VQCTDLDLRL TPGLTGKISS  180
RGLGAMSYLP ETRRPGTPSM NSEESVTTTC FETPHSPEGE RKLLNLFL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.76260.0fruit| inflorescence| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3861150.0FQ386115.1 Vitis vinifera clone SS0AEB2YP15.
GenBankFQ3876740.0FQ387674.1 Vitis vinifera clone SS0AEB25YK23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002284296.11e-167PREDICTED: LOB domain-containing protein 38
SwissprotQ9SN236e-83LBD38_ARATH; LOB domain-containing protein 38
TrEMBLD7TT881e-166D7TT88_VITVI; Uncharacterized protein
STRINGVIT_07s0129g00330.t011e-167(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.13e-81LOB domain-containing protein 39