PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01000089001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB_related
Protein Properties Length: 1152aa    MW: 129501 Da    PI: 8.7979
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01000089001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.9e-094682341
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41
                        W++eE e +++a +++G++ Wk++a  +  +R+l+++ 
  GSVIVT01000089001 46 QWSKEELEHFYEAYRKYGKD-WKKVAGVVR-NRSLEMVE 82
                       6*****************99.*********.***99886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.97E-113990IPR009057Homeodomain-like
PROSITE profilePS512939.0384295IPR017884SANT domain
SMARTSM007177.0E-44391IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-44681IPR009057Homeodomain-like
PfamPF002491.4E-74686IPR001005SANT/Myb domain
CDDcd001673.11E-54781No hitNo description
SMARTSM011353.5E-53619720IPR033471DIRP domain
PfamPF065841.2E-32619719IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1152 aa     Download sequence    Send to blast
MAPTKKYRGV NKRFLNSHEV SLDRDIENST KSRQRKRKLS DMLGSQWSKE ELEHFYEAYR  60
KYGKDWKKVA GVVRNRSLEM VEALYNMNRA YLSLPEGTAS VVGLIAMMTD HYNVLGGGDN  120
ESNDVSGTPR KTQKPVRGKV HLSISKEELL QPPSVANDGC LSLLKRSLSD GIRPHAVRKR  180
TPRFPVSCSY KKGNEESYFS LNKVSLRSDM DTTDDEVAHV AALTLTEASL REGSHASQAP  240
FRRTEHMKAS PVQSRERMPL QMVQTKIHGI VTDEDYFEGN LESRGAENGD YAGDTCSLMD  300
SECVGTVVLQ EGKKFCDNEK VEEIGNNQFD DCREACSDTE GHNMNPVKRK IDTEVTNAKI  360
EPSSPCGQRK RSKKLFFGDE SSALDALQTL ADLSLMMPDS AVESESSIQL KEEKITLDNV  420
HEAMFASHQR DKNKLMVAKE RVVKAIPGVE VTASIKYEHG RDSAIDVNAL SEAQQRPESN  480
NKQLKRKDKS LASKALAEEE NKSMVKGRHA GQIAALSKQW KSVRPLEHSL NSDQKEARND  540
LAGSTASHVN LPTKQRSRRK MHLKKTLIQK EMKSPENSFS KQSSKYSTSL QYSTDYLKKK  600
ISCSLSSYMA RRWCTFEWFY SAIDYPWFVK KEFVEYLDHV GLGHIQRLSR VEWDVIRSSL  660
GKPRRFSERF LHEEKEKLKQ YRKSVRTHYT ELRTGAREGL PRDLARPLSV GQRVIALHPK  720
TREVHNGSVL TVDHDKCMVQ FDRAEIGVEF VMDIDCMPSD PLDNMPEALR RQNSTVGQFL  780
VNSKEQKVRH LVNAHTPMNS LIKQAKHNRF RLTIDRISQE KYLLSEIDRS SLYQIFKSKH  840
LGNNATYGQP YMVAVQARED DIQALSELNC AFDKKCPFST EALLMELRHA NNDVLGNEDG  900
FLKDSESLKK HCAMVLVHLK EVLWQVSSAL LYLRQCEAYP GKTLPPWLTT STISSGPLMP  960
PSSLDNPSST SLEPGFNVGE IVLGSRSKAH KMVHAAMKAI ASMKQGEEAF TRIGDALDSM  1020
HKQQLRSDSG VSVLRVLDPV NGSFAHPNQL TSFTSEPLLT SHASGPKLPN DSGKIEAPIA  1080
SELITSCVAA LLMIQTCTER QYPPSDVAQI LDSAIISLHP GCPQNLPIYR EIEMCMGRIK  1140
TQILALVPTL H*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4342191e-170AM434219.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X191377.6, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019080574.10.0PREDICTED: protein ALWAYS EARLY 2 isoform X1
RefseqXP_019080575.10.0PREDICTED: protein ALWAYS EARLY 2 isoform X1
RefseqXP_019080577.10.0PREDICTED: protein ALWAYS EARLY 2 isoform X3
TrEMBLA0A251P2940.0A0A251P294_PRUPE; Uncharacterized protein
STRINGXP_008246389.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP24791321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding