PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun009374
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 232aa    MW: 26743.3 Da    PI: 9.9677
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-11782PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.63.5e-51141381128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrFhPtdeelv++yLk+kv + +l++ +vi+e+d++k++PwdLp      eke yfFs+++ ky++g+r+nrat+sgyWkatg dk++l++ ++++
  Vun009374  14 LPPGFRFHPTDEELVMQYLKRKVFSCPLPA-SVIPEFDVCKSDPWDLPGD---LEKERYFFSTKEPKYPNGNRSNRATSSGYWKATGLDKQILTSkGNQV 109
                79****************************.99***************54...46899**********************************99857778 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                vg+kktLvfy+g+ p+g++tdW+mheyrl
  Vun009374 110 VGMKKTLVFYRGKPPHGSRTDWIMHEYRL 138
                ***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-6110158IPR003441NAC domain
PROSITE profilePS5100558.32414158IPR003441NAC domain
PfamPF023652.2E-2715138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEKLNFLKNG ELRLPPGFRF HPTDEELVMQ YLKRKVFSCP LPASVIPEFD VCKSDPWDLP  60
GDLEKERYFF STKEPKYPNG NRSNRATSSG YWKATGLDKQ ILTSKGNQVV GMKKTLVFYR  120
GKPPHGSRTD WIMHEYRLLN SPSQAPMENW VLCRIFLKRR SGGRNGEEKE MESLRGGVEN  180
RKVRKSKMVF YNFLAQRKTD SSSSAGSGIT HESDEHEESS SSDTFPYFRT KP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-511116214169NO APICAL MERISTEM PROTEIN
1ut4_B5e-511116214169NO APICAL MERISTEM PROTEIN
1ut7_A5e-511116214169NO APICAL MERISTEM PROTEIN
1ut7_B5e-511116214169NO APICAL MERISTEM PROTEIN
3swm_A6e-511116217172NAC domain-containing protein 19
3swm_B6e-511116217172NAC domain-containing protein 19
3swm_C6e-511116217172NAC domain-containing protein 19
3swm_D6e-511116217172NAC domain-containing protein 19
3swp_A6e-511116217172NAC domain-containing protein 19
3swp_B6e-511116217172NAC domain-containing protein 19
3swp_C6e-511116217172NAC domain-containing protein 19
3swp_D6e-511116217172NAC domain-containing protein 19
4dul_A5e-511116214169NAC domain-containing protein 19
4dul_B5e-511116214169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027930186.11e-173NAC domain-containing protein 83-like
SwissprotQ9FY932e-97NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A1S3TRL21e-149A0A1S3TRL2_VIGRR; NAC domain-containing protein 83-like
STRINGXP_007139098.11e-141(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-98NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]