PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun008699
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 258aa    MW: 27977.8 Da    PI: 10.2607
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45834534PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.31.8e-13556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT++E++ l+ +v+++G+g Wk I +  +     + R+  ++k++w+++
        Vun008699  5 KQKWTQDEEDALIAGVEKHGPGKWKNILKDPQfapflTSRSNIDLKDKWRNL 56
                     79************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.457162IPR017930Myb domain
SuperFamilySSF466894.49E-16258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-15456IPR009057Homeodomain-like
SMARTSM007171.1E-8459IPR001005SANT/Myb domain
PfamPF002494.1E-10556IPR001005SANT/Myb domain
CDDcd116607.01E-22656No hitNo description
SMARTSM005268.7E-17119184IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467852.56E-17121201IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.2E-16121196IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150427.294121189IPR005818Linker histone H1/H5, domain H15
CDDcd000732.43E-11123201No hitNo description
PfamPF005382.0E-12123182IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGNQKQKWTQ DEEDALIAGV EKHGPGKWKN ILKDPQFAPF LTSRSNIDLK DKWRNLSVSN  60
GSQGSKDKPR APKLKALPAP PSATTSAATT ATPQNAASAP QNAPSDAAVP DSSLNDQDVK  120
NPPRYNSMVF EALSALKDNN GSDLNAIVSF IEQKHQVPQN FRRALSTRLR RLVSQGKLEK  180
VQNCYKIKKD APSGTKSPSP KPKDVRPAPS QPAPNRNDTP QFLSLXASNE TIKDAADTAA  240
YRIADAESKS YLAAEAVX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014515729.11e-150PREDICTED: telomere repeat-binding factor 4-like isoform X1
SwissprotF4IEY42e-71TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBLV7ATH31e-149V7ATH3_PHAVU; Uncharacterized protein
STRINGGLYMA07G00930.11e-127(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.24e-62MYB_related family protein