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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vun008084 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 288aa MW: 31520.8 Da PI: 9.4715 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.7 | 3e-14 | 25 | 69 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a +++ + Wk+I +g +t q++s+ qky Vun008084 25 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 69 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.2E-17 | 19 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.291 | 20 | 74 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 8.4E-19 | 23 | 72 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.6E-7 | 23 | 75 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-11 | 24 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.7E-12 | 25 | 69 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.08E-9 | 27 | 70 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MAAAVAASDG SGKKVRKPYT ITKSRESWTE EEHDKFLEAL QLFDRDWKKI EDFVGSKTVI 60 QIRSHAQKYF LKVQKNGTVA HVPPPRPKRK AAHPYPQKAS KNVLVPLPAS IGYASSTNML 120 APGFATWDET SLLMNTGASK SMTCQDEPNN IRGNEADIGS KGMPKITNSS LSGVRNSTRT 180 LPSSEIPKQG KQAPVLHGLP DFAEVYSFIG SVFDPDTNDH VQKLKEMDPI NFETVLLLMR 240 NLTVNLSSPD FEPIKKALST YDVNGMAVGV GTGIDVKKNT NDLSCQTA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014491922.1 | 0.0 | PREDICTED: protein REVEILLE 8-like isoform X1 | ||||
Refseq | XP_014491921.1 | 0.0 | PREDICTED: protein REVEILLE 8-like isoform X1 | ||||
Swissprot | Q8RWU3 | 1e-135 | RVE8_ARATH; Protein REVEILLE 8 | ||||
TrEMBL | V7BG08 | 0.0 | V7BG08_PHAVU; Uncharacterized protein | ||||
STRING | GLYMA13G19910.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09600.1 | 1e-120 | MYB_related family protein |