PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun005788
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 173aa    MW: 20081.2 Da    PI: 6.0211
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-22899PU_refplantGDBView CDS
gnl|UG|Vun#S45804426PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.79.8e-32211111128
        NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfy 109
                deelvv++L++k++  +++  +vi+++++y+++Pw+L+ ++ ae ++wy++s+r         +nr+t +gyWk tg +++v+s+ +++ vg+kk +vf+
  Vun005788   2 DEELVVHFLHRKASLLPCHP-DVIPDLELYQYDPWQLHGRALAEGNQWYYYSRRT--------QNRVTGNGYWKPTGMEEPVVSSsNNKRVGMKKYFVFH 92 
                9****************999.99**************977778899******984........58******************9877888********** PP

        NAM 110 kgrapkgektdWvmheyrl 128
                 g+a  g kt+W+m+eyrl
  Vun005788  93 VGEAAAGIKTNWIMQEYRL 111
                *****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100539.511142IPR003441NAC domain
PfamPF023651.1E-162111IPR003441NAC domain
SuperFamilySSF1019412.62E-412141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
XDEELVVHFL HRKASLLPCH PDVIPDLELY QYDPWQLHGR ALAEGNQWYY YSRRTQNRVT  60
GNGYWKPTGM EEPVVSSSNN KRVGMKKYFV FHVGEAAAGI KTNWIMQEYR LSDSASSTRS  120
SKRKPQPKAD YKKWVICRVY ERNGEEDNGT ELSCLDEVFL SLDDDLDEIS LPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-32214330169NAC domain-containing protein 19
3swm_B2e-32214330169NAC domain-containing protein 19
3swm_C2e-32214330169NAC domain-containing protein 19
3swm_D2e-32214330169NAC domain-containing protein 19
3swp_A2e-32214330169NAC domain-containing protein 19
3swp_B2e-32214330169NAC domain-containing protein 19
3swp_C2e-32214330169NAC domain-containing protein 19
3swp_D2e-32214330169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027931410.11e-128NAC domain-containing protein 104-like
SwissprotQ8GWK68e-76NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A4D6KJJ31e-126A0A4D6KJJ3_VIGUN; Uncharacterized protein
STRINGXP_007148437.11e-113(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.11e-69xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]