PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun005402
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 187aa    MW: 21476.9 Da    PI: 9.9471
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-11783PU_refplantGDBView CDS
gnl|UG|Vun#S45802786PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.45.7e-3639336128
        NAM  36 evdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                e+d++k++PwdLp      eke yfFs+++ ky++g+r+nrat+sgyWkatg dk++l++ ++++vg+kktLvfy+g+ p+g++tdW+mheyrl
  Vun005402   3 EFDVCKSDPWDLPGD---LEKERYFFSTKEPKYPNGNRSNRATSSGYWKATGLDKQILTSkGNQVVGMKKTLVFYRGKPPHGSRTDWIMHEYRL 93 
                78***********54...46899**********************************99857778***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100544.6051113IPR003441NAC domain
SuperFamilySSF1019411.83E-422113IPR003441NAC domain
PfamPF023654.0E-151093IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
XPEFDVCKSD PWDLPGDLEK ERYFFSTKEP KYPNGNRSNR ATSSGYWKAT GLDKQILTSK  60
GNQVVGMKKT LVFYRGKPPH GSRTDWIMHE YRLLNSPSQA PMENWVLCRI FLKRRSGGRN  120
GEEKEMESLR GKVDSRKVRK LKMVFYDFLA QSKTDCSSSA GSGITHESDE NEESSSSNTF  180
PYVRRKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-35311754172NAC domain-containing protein 19
3swm_B1e-35311754172NAC domain-containing protein 19
3swm_C1e-35311754172NAC domain-containing protein 19
3swm_D1e-35311754172NAC domain-containing protein 19
3swp_A1e-35311754172NAC domain-containing protein 19
3swp_B1e-35311754172NAC domain-containing protein 19
3swp_C1e-35311754172NAC domain-containing protein 19
3swp_D1e-35311754172NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027928673.11e-137NAC domain-containing protein 83-like
SwissprotQ9FY938e-70NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A4D6NH421e-123A0A4D6NH42_VIGUN; Uncharacterized protein
STRINGXP_007139098.11e-109(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.17e-70NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]