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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Vun002156 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | E2F/DP | ||||||||||||
Protein Properties | Length: 318aa MW: 35320.3 Da PI: 5.0167 | ||||||||||||
Description | E2F/DP family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 80.4 | 1.6e-25 | 74 | 158 | 2 | 71 |
E2F_TDP 2 keksLrlltqkflklleksee.givtlne..vakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 ++++Lr++++k ++ek+e+ g++t+ne va+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg Vun002156 74 SGRGLRQFSMK---VCEKVENrGRTTYNEvxVADELVAEfsdpinseltpdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 158 689********...******99******94459**********************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF009404 | 4.8E-124 | 7 | 317 | IPR015648 | Transcription factor DP |
Gene3D | G3DSA:1.10.10.10 | 1.6E-43 | 69 | 164 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 6.7E-31 | 73 | 158 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 5.2E-23 | 75 | 158 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.14E-18 | 76 | 159 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
CDD | cd14458 | 2.19E-43 | 163 | 266 | IPR014889 | Transcription factor DP, C-terminal |
SMART | SM01138 | 3.4E-67 | 165 | 318 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 2.48E-43 | 165 | 279 | No hit | No description |
Pfam | PF08781 | 5.6E-42 | 166 | 279 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007049 | Biological Process | cell cycle | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MADEDDDEVL GCATATTTTA SGQSASTNSL PPPADNTLLK LNHLDLHADD AGSQASLAGK 60 KKKRGQRAVG PDKSGRGLRQ FSMKVCEKVE NRGRTTYNEV XVADELVAEF SDPINSELTP 120 DQQQYDEKNI RRRVYDALNV LMAMDIISKD KKEIQWKGLP RTSVNDIEEI KTERLALRNR 180 IEKKTAYLQE LEEQFVGLQN LIQRNEQLYS SGNPPSGGVS LPFILVQTRP HATVEVEISE 240 DMQLVHFDFN STPFELHDDN YVLKAMKFCE RPQQDNMTHN FTAGGEGSSM SGLCQPQTPS 300 TNLKVSNRPP TSPPLPGI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 1e-32 | 67 | 163 | 1 | 93 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014523149.1 | 0.0 | PREDICTED: transcription factor-like protein DPB | ||||
Swissprot | Q9FNY2 | 1e-146 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | A0A0S3SED5 | 0.0 | A0A0S3SED5_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA12G02050.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 1e-146 | Transcription factor DP |