PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g12000.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 338aa    MW: 37549.9 Da    PI: 9.3653
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g12000.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.6e-11110138331
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkas 31 
                      ++h+e+ErrRR+riN+ +++Lr+llP+ +
  Vradi11g12000.1 110 KSHSEAERRRRERINNHLAKLRSLLPNTT 138
                      79************************962 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.037107195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-11110139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-8110137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-13110144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-6113201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-11177200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-13178198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.80E-5231307No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MQPWSMPPVH SFNPGPVHYN NNTNPVRDHH DQTFIVPPTP SPYASFFSRR VPSLQFAYES  60
PSSDHHHLRI ISDTLGPMVQ PGSAPFGLQA ELGKMTAQEI MEAKALAASK SHSEAERRRR  120
ERINNHLAKL RSLLPNTTKS VRKVHYMSLI FHNLPGKKRC LLCAVQSYKK VVLILLWQTD  180
KASLLAEVIQ HVKELKRQTS LIAESSAVPT EADELTVDAA DEDGKFVIKA SLCCEDRSDL  240
LPDLIKTLKA LKLRTLKAEI TSLGGRVKNV LVIAGDEESS NTNGEQSIQQ QQQYCITSIQ  300
EALKAVMEKS GVGDESASGN VKRQRTNNIN FLQQRSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115120ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014520421.10.0PREDICTED: transcription factor bHLH30-like
SwissprotQ9S7Y11e-101BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A0L9UU690.0A0A0L9UU69_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T1X80.0A0A0S3T1X8_PHAAN; Uncharacterized protein
STRINGGLYMA01G22530.21e-159(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45893458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-79bHLH family protein