PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g11310.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 353aa    MW: 39693.4 Da    PI: 8.1171
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g11310.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.52.8e-19219310499
                      E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      vl ps+  + ++++lp  fae++ +g++     ++l+ ++gr+W+v++ yr+++    l++GW eF  +n+L egD++vF+l +++e  l v+v
  Vradi11g11310.1 219 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQLPNGRQWSVRCLYRGGR--AKLSQGWFEFTVENNLGEGDVCVFELLRTKEVVLQVTV 307
                      78899******************877743...5***************665555..66************************99999999**99 PP

                      E-S CS
               B3  97 frk 99 
                      fr 
  Vradi11g11310.1 308 FRV 310
                      985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-25208309IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-25209310IPR015300DNA-binding pseudobarrel domain
CDDcd100176.92E-24214309No hitNo description
PROSITE profilePS5086314.17216311IPR003340B3 DNA binding domain
SMARTSM010191.2E-20216311IPR003340B3 DNA binding domain
PfamPF023624.4E-17219309IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MYEGNSSFIV HIFNLSTSEI NYQSAMRNHM EGPCFVNYNH IFEEMEDIDS IDLSDLSPSY  60
LTSGAMQNKG FAGSVDQLTP GKSHTPALQN LFNGGSKLNR VNWGDGGSSY SSKSANSQGS  120
QSTRDIGVQF NAVEFKRSTD ELKLRYSNEE AVNKTAKKKR KSESQGEEPS GENEEEAEMR  180
YRFYESASAR KRTVTAEERE RAINASKAFE PTNPFCRVVL RPSYLYRGCI MYLPSCFAEK  240
NLNGVSGFIK LQLPNGRQWS VRCLYRGGRA KLSQGWFEFT VENNLGEGDV CVFELLRTKE  300
VVLQVTVFRV TEDANLLNSP PVQQLSQNMS HTKLLNPHLQ HRVSSTVKLI RN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-7318231215144B3 domain-containing transcription factor VRN1
4i1k_B3e-7318231215144B3 domain-containing transcription factor VRN1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g11310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022643270.10.0B3 domain-containing transcription factor VRN1 isoform X2
RefseqXP_022643271.10.0B3 domain-containing transcription factor VRN1 isoform X2
SwissprotQ8L3W11e-84VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLA0A3Q0FGT00.0A0A3Q0FGT0_VIGRR; B3 domain-containing transcription factor VRN1 isoform X2
STRINGXP_007153153.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.18e-79B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]