PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g12650.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 190aa    MW: 21962.5 Da    PI: 5.1062
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g12650.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM122.34.4e-3881271128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrF Ptdeel+v++L++k++  +++  +vi+++++y+++Pw+L+ ++ ae ++wy++s+r         +nr+t +gyWk tg +++v+s
  Vradi10g12650.1   8 LPPGFRFYPTDEELIVHFLHRKASLLPCHP-DVIPDLELYQYDPWELHGRALAEGNQWYYYSRRT--------QNRVTGNGYWKPTGMEEPVVS 92 
                      79*************************999.99**************977778899******984........58*****************99 PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + +++ vg+kk +vf+ g++ ++ kt+W+m+eyrl
  Vradi10g12650.1  93 SsNSKRVGMKKYFVFHVGEDATAIKTNWIMQEYRL 127
                      878889***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-495157IPR003441NAC domain
PROSITE profilePS5100546.3158158IPR003441NAC domain
PfamPF023654.4E-239127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MADTNVNLPP GFRFYPTDEE LIVHFLHRKA SLLPCHPDVI PDLELYQYDP WELHGRALAE  60
GNQWYYYSRR TQNRVTGNGY WKPTGMEEPV VSSSNSKRVG MKKYFVFHVG EDATAIKTNW  120
IMQEYRLSDS ASSTRSSKRK PQPKSDYNKW VICRVYERNG EEDNGTELSC LDEVFLSLDD  180
DLDEISLPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-41415913166NO APICAL MERISTEM PROTEIN
1ut4_B3e-41415913166NO APICAL MERISTEM PROTEIN
1ut7_A3e-41415913166NO APICAL MERISTEM PROTEIN
1ut7_B3e-41415913166NO APICAL MERISTEM PROTEIN
3swm_A3e-41415916169NAC domain-containing protein 19
3swm_B3e-41415916169NAC domain-containing protein 19
3swm_C3e-41415916169NAC domain-containing protein 19
3swm_D3e-41415916169NAC domain-containing protein 19
3swp_A3e-41415916169NAC domain-containing protein 19
3swp_B3e-41415916169NAC domain-containing protein 19
3swp_C3e-41415916169NAC domain-containing protein 19
3swp_D3e-41415916169NAC domain-containing protein 19
4dul_A3e-41415913166NAC domain-containing protein 19
4dul_B3e-41415913166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g12650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-137AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014518079.11e-142NAC domain-containing protein 104
RefseqXP_017435791.11e-142PREDICTED: NAC domain-containing protein 104-like
SwissprotQ8GWK62e-84NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A0L9VH661e-140A0A0L9VH66_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S1Y91e-140A0A0S3S1Y9_PHAAN; Uncharacterized protein
TrEMBLA0A1S3VJ011e-140A0A1S3VJ01_VIGRR; NAC domain-containing protein 104
STRINGXP_007148437.11e-126(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.13e-78xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]