PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g08310.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YC
Protein Properties Length: 606aa    MW: 67881.5 Da    PI: 7.0631
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g08310.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC138.91.3e-4362161297
            NF-YC   2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                      +ksfw++q   ie++td++ +h lPl+r+kki+k+dedvk +saeaPv+++kacelfi+elt+++w ++e n+rrt+kksdia+a++rtd+fdf
  Vradi10g08310.1  62 VKSFWAQQlkeIEESTDLRnQHMLPLSRVKKIMKSDEDVKLVSAEAPVVFAKACELFIMELTMKAWANTEANNRRTIKKSDIASAIARTDVFDF 155
                      799***9998899*****967889********************************************************************** PP

            NF-YC  92 lvdivp 97 
                      l di p
  Vradi10g08310.1 156 LEDIAP 161
                      ***987 PP

2NF-YC111.45.1e-35268356287
            NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 
                      +k+fwe+q   i++++d+k ++lPl+rikki+k+dedvkm+s+ea +ll kacelfi+elt+rsw h e+ kr+ +kk+d+a+a++  d
  Vradi10g08310.1 268 VKTFWERQmkeIKESSDLKSNSLPLSRIKKIMKFDEDVKMVSSEATMLLGKACELFIMELTMRSWAHVEDDKRKIIKKTDVASAISMND 356
                      699***9965567789*********************************************************************9776 PP

3NF-YC152.11.1e-474175201101
            NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                      ql +fw+kq   +e++++ +nh lPlarikki+k+dedv+m+saeaPvll+kace+fi+elt+r+w + eenkrrtl k+diaaa+++td++df
  Vradi10g08310.1 417 QLSKFWAKQhqeVEETSESRNHCLPLARIKKIMKSDEDVRMVSAEAPVLLAKACEMFIMELTMRAWANVEENKRRTLSKNDIAAAMSKTDMYDF 510
                      7999***9988899999***************************************************************************** PP

            NF-YC  92 lvdivprdel 101
                      lvdivpr+e+
  Vradi10g08310.1 511 LVDIVPREET 520
                      *******986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.95E-2920156IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.9E-3385161IPR009072Histone-fold
PfamPF008081.7E-2085147IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471133.02E-24259357IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.9E-28280353IPR009072Histone-fold
PfamPF008088.8E-18289352IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.18E-29418511IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.4E-36440517IPR009072Histone-fold
PfamPF008081.1E-21440502IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MEQNQHGQPG RGIGSAPAQE AHSKNQYQSK PTNIQTVASS YPGEHHYALR YQQRQDQLEE  60
KVKSFWAQQL KEIEESTDLR NQHMLPLSRV KKIMKSDEDV KLVSAEAPVV FAKACELFIM  120
ELTMKAWANT EANNRRTIKK SDIASAIART DVFDFLEDIA PIPRNHKNTM MHPLLPGNAP  180
TPTQNVPYMP PPQHVAAKIP QALQTYPLAP RAKMDQNQQG EAGKRIGADG GKKLTAGVVP  240
VASPYAGGYR YDRQCIYQRQ QEKLQQRVKT FWERQMKEIK ESSDLKSNSL PLSRIKKIMK  300
FDEDVKMVSS EATMLLGKAC ELFIMELTMR SWAHVEDDKR KIIKKTDVAS AISMNDIPLH  360
KNMDEKKHDQ AAKEGCDKSK VQSDPKMDPP TSPLALTIGP SASSSNPQPP KEPLEQQLSK  420
FWAKQHQEVE ETSESRNHCL PLARIKKIMK SDEDVRMVSA EAPVLLAKAC EMFIMELTMR  480
AWANVEENKR RTLSKNDIAA AMSKTDMYDF LVDIVPREET RGPQVFAGIP GTPIPPTLSQ  540
ILPNCPVPPH NQHDAAGQQS GAPTMLMGMP LLDPTDPEQL QDRPSPTPML PIPEEEDNPS  600
PDSDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C3e-35525179119HapE
4g92_C3e-35525179119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134140RRTIKKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014517420.11e-175PREDICTED: nuclear transcription factor Y subunit C-9-like
SwissprotQ8L4B24e-50NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
SwissprotQ9SMP05e-50NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLA0A0L9TTQ11e-153A0A0L9TTQ1_PHAAN; Uncharacterized protein
STRINGGLYMA08G15700.16e-58(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.43e-51nuclear factor Y, subunit C9