PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g18480.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 350aa    MW: 39207.4 Da    PI: 9.2368
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g18480.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.3e-0953141147
                      TSSS-HHHHHHHHHHHHHTTTT............................................-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg............................................tWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++++a +++  +                                            +Wk+I + +g  +t  q++s+ qky
  Vradi08g18480.1  53 RESWTEPEHDKFLEALQLYN-HfqyvesrdtldstdsmagfdcsvlhcsrlvererirrklgrfdrDWKKIEAFVG-SKTVIQIRSHAQKY 141
                      789****************8.56*****************************************************.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-55179IPR009057Homeodomain-like
SMARTSM007174.2E-552144IPR001005SANT/Myb domain
SuperFamilySSF466895.23E-7110147IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-7114144IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.4E-5120147IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MVSRNSNPSE AFHMDPSAMS LPGILPFAAA TGADSLEDPA KKTRKPYTIT KSRESWTEPE  60
HDKFLEALQL YNHFQYVESR DTLDSTDSMA GFDCSVLHCS RLVERERIRR KLGRFDRDWK  120
KIEAFVGSKT VIQIRSHAQK YFLKVQKNGT SEHLPPPRPK RKAAHPYPQK ASKNVPVLSQ  180
VSGGSLQSSS ALIEPGYIMK RDSSAMLKTP IIKAAASSWS NNSLQKSTNL LHGHKVNNCC  240
SNNESPRGQL VGESNGQGNN IHPLRILPDF GQVYSFIGSV FDPNVTGHLQ KLKRMDPIDV  300
ETVLLLMRNL SINLVSPDFE DHRRLLASYE VEPESDNYYI NADRNMLEG*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g18480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512388.10.0protein REVEILLE 6 isoform X1
SwissprotQ8H0W31e-109RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A1S3V2210.0A0A1S3V221_VIGRR; protein REVEILLE 6 isoform X1
STRINGXP_007143469.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11193396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.18e-93MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]