PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g16460.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 339aa    MW: 37612.1 Da    PI: 6.3221
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g16460.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92.1e-14156202354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Vradi08g16460.1 156 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 202
                      79*************************9.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-12156202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-14157211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-14157209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-13159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.95E-5166205No hitNo description
CDDcd048734.08E-6239282No hitNo description
Gene3DG3DSA:3.30.70.2609.8E-4239288No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MIQEDQGQCS SQAINNYHQA YQDQLLLQQQ MQQQNNDIFG GGGRGGLNMY PGEVSQIMHQ  60
PWSVSHNQVH HPFNTVREHD PFLVPPQPSP YATFFNRRGH SLQFAYDGSS SDHLRIISDT  120
LGPVVQPGSA PFGLQTELAK MTAQEIMEAK ALAASKSHSE AERRRRERIN NHLAKLRSLL  180
PSTTKTDKAS LLAEVIQHVK ELKRQTSLIA ESSPVPTEAD ELTVVDEADE DGRSVIKASL  240
CCEDRSDLFP ELIRTLKALR LRTLKAEITT LGGRVKNVLF ITGEEEDSSS GSEDHNHQQQ  300
YCISSIQEAL KAVMEKSVGD ESASANIKRQ RTNIISMS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161166ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511187.10.0PREDICTED: transcription factor bHLH30-like
RefseqXP_014511188.10.0PREDICTED: transcription factor bHLH30-like
SwissprotQ9S7Y11e-104BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A0L9TYK70.0A0A0L9TYK7_PHAAN; Uncharacterized protein
STRINGGLYMA10G34910.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45893458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.16e-88bHLH family protein