PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g08840.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 245aa    MW: 27128.9 Da    PI: 10.4091
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g08840.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1001.4e-31178236360
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                      D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+k
  Vradi08g08840.1 178 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPTMLIVTYEGEHNHPK 236
                      99***********************9988****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.4E-17129174IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.809.9E-34164236IPR003657WRKY domain
PROSITE profilePS5081129.998171237IPR003657WRKY domain
SuperFamilySSF1182902.75E-27174236IPR003657WRKY domain
SMARTSM007744.7E-38176236IPR003657WRKY domain
PfamPF031063.0E-27178235IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MVQHRNLVVE TGDAVVKFKK VVSLLQSGLG HARVRKVKNP QVPFTHQSIF LDNPNCKTNN  60
HHSKNLQLFQ PSFPDNSIVE LGSTIKHSLS LGQPSLELSS NGSVANLDGS AFHLIGAPHS  120
SDQNSQQHKR KCSARGDEGS LKCGSSSRCH CSKKRKHRMK RSIKVPAISN KLADIPPDDY  180
SWRKYGQKPI KGSPHPRGYY KCSSMRGCPA RKHVERCLEE PTMLIVTYEG EHNHPKLPTQ  240
STNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20169238775WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g08840.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312371e-174KT031237.1 Glycine max clone HN_CCL_17 WRKY transcription factor (Glyma10g03820.2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014629302.11e-113LOW QUALITY PROTEIN: probable WRKY transcription factor 21
SwissprotO043361e-79WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A151S3451e-149A0A151S345_CAJCA; Putative WRKY transcription factor 39
STRINGGLYMA03G31630.11e-108(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.14e-64WRKY DNA-binding protein 74