PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g08710.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 198aa    MW: 21978.4 Da    PI: 8.6523
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g08710.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00023658123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y C+ C++ F++   L  H+++H
  Vradi08g08710.1 36 YACSFCKREFRSAQALGGHMNVH 58
                     89*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.86E-63362No hitNo description
Gene3DG3DSA:3.30.160.607.6E-43461IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1983663IPR007087Zinc finger, C2H2
PfamPF139121.5E-63659IPR007087Zinc finger, C2H2
SMARTSM003550.00923658IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MEGNYLNRNS TTTPQREDSF GFEEHTWGNS WPARNYACSF CKREFRSAQA LGGHMNVHRR  60
DRARLRSSLS SWVSECPKPN PSTKPNNPTL LPTSSSPSPL SDQSFNCPHP SPLCTPCLTL  120
SSAPPFPAGY STVLYLEAIF KPMSGRSKNK EDRESKAREM NASLRSNSSS IDRIRCFACS  180
PCDVAPYHDD LSPNRNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-113158229superman protein
2l1o_A2e-113158229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g08710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017414198.13e-77PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A0L9TX526e-76A0A0L9TX52_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SRQ96e-76A0A0S3SRQ9_PHAAN; Uncharacterized protein
STRINGXP_007144930.14e-63(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.13e-14C2H2 family protein