PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g02140.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 263aa    MW: 28816.4 Da    PI: 5.9728
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g02140.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.7e-09100147455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++iN ++  L+el+P +    +k    a +L k +++++sLq
  Vradi08g02140.1 100 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDKIINHVQSLQ 147
                      8*************************9....899999*************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.15E-1594165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.58E-1094151No hitNo description
PROSITE profilePS5088814.46296146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1497160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-7100147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-8102152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MLEAIQFNEE IQGIIAPAPE TASSFTALLE LPPTQAGGGS ASDPTLENKD EKGLKRKERE  60
KKVKASSKKS KSVVPDDSSC DGQKLPYVHV RVRRGQATDS HSLAERARRE KINARMKLLQ  120
ELVPGCNKIS GTALVLDKII NHVQSLQHEV EILSMKLAAV NPVIDFNLDS LLATEGVSPM  180
DCNFPPTVAP VVWPEIPQNA NRQQYQQPWQ FDAFHHQPIW GREEDNTNFM TPENSLLSYD  240
SSANSVEDGA LKGYRGGGTS SN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-109AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014514536.11e-140PREDICTED: transcription factor bHLH48-like isoform X2
SwissprotQ8VZ024e-61BH048_ARATH; Transcription factor bHLH48
TrEMBLA0A0S3SU921e-139A0A0S3SU92_PHAAN; Uncharacterized protein
STRINGGLYMA10G12210.11e-119(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49852945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.23e-65bHLH family protein