PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g22280.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 436aa    MW: 47593.2 Da    PI: 8.7626
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g22280.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.13.3e-11150206155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  Vradi07g22280.1 150 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 206
                      57*******************5444.2455535555.7799999*************98 PP

2AP247.64.3e-15249300155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Vradi07g22280.1 249 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 300
                      57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.80E-18150216No hitNo description
SuperFamilySSF541711.11E-14150216IPR016177DNA-binding domain
PfamPF008478.7E-9150206IPR001471AP2/ERF domain
SMARTSM003803.4E-22151220IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-12151215IPR001471AP2/ERF domain
PROSITE profilePS5103217.174151214IPR001471AP2/ERF domain
PRINTSPR003671.6E-6152163IPR001471AP2/ERF domain
PfamPF008475.3E-10249300IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-18249310IPR016177DNA-binding domain
CDDcd000181.41E-24249310No hitNo description
SMARTSM003801.5E-33250314IPR001471AP2/ERF domain
PROSITE profilePS5103219.045250308IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-18250309IPR001471AP2/ERF domain
PRINTSPR003671.6E-6290310IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MDSSSSSPPN NNSLAFSLSN HFPNPSSSHS TSPLSLFHSF TSYPSLTLTG SNTVDASPEA  60
PGRVGATNLS IFTAAPKFED FLGSSATPDT TATGAPPQLP QFSTDNNLYE SELKTTIAAC  120
FPRGFAVEAS TEPQKPSPKK TVDTFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQSR  180
KGRQGGYDKE DKAARAYDLA ALKYWGPTTT TNFPISNYEK ELGEMKNMTR QEFVASLRRK  240
SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG  300
LNAVTNFDMS RYDVKSIANS TLPIGGLSSK NKTSADSASE SKSHEASRSD ERDPSSASSV  360
TFGSQQQPSS STLSFAIPIK QDPSDYWSIL GYHNPTLDNS GHYVIWNCTE NGTYNTNTAF  420
FGVMPCPTLN SNPFT*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g22280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014505771.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-139AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A1S3UIB40.0A0A1S3UIB4_VIGRR; AP2-like ethylene-responsive transcription factor AIL5
STRINGXP_007154750.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-134AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]