PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g17950.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YB
Protein Properties Length: 187aa    MW: 20748.7 Da    PI: 4.2224
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g17950.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB31.54.1e-1036123585
            NF-YB   5 drflPianv.srimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwala.........tlGfedyveplkv 85 
                      d+f+Pi  v +  +  ++Pa +   +d     q  ++efi +++se+++ c+re+++ti+++ +l al           lGf +y+e++ +
  Vradi07g17950.1  36 DNFVPIIFVmVSSIEAIVPACCHALDDVN---QFVIVEFINLISSESNEVCNREEKRTIAPEHVLKALQvfcisiaspVLGFGEYIEEVYA 123
                      66777765514556777777766655554...5569****************************988752222222335899999988754 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.9E-4228IPR009072Histone-fold
PfamPF008088.3E-867100IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.109.4E-1867169IPR009072Histone-fold
SuperFamilySSF471139.02E-1767171IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MTKIIKEMLP PDVRVARDAQ DLLIECCVGQ NFIINDNFVP IIFVMVSSIE AIVPACCHAL  60
DDVNQFVIVE FINLISSESN EVCNREEKRT IAPEHVLKAL QVFCISIASP VLGFGEYIEE  120
VYAAYEQHKM ETMQDSLKGG KWSNGAEMTE EEALAEQQRM FAEARARMNG GGITSKQPDT  180
DQSLDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B2e-20116521133Transcription Regulator NC2 beta chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g17950.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1367942e-86BT136794.1 Lotus japonicus clone JCVI-FLLj-3M19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014509844.12e-86protein Dr1 homolog isoform X3
RefseqXP_014509845.12e-86protein Dr1 homolog isoform X3
RefseqXP_014509847.12e-86protein Dr1 homolog isoform X5
RefseqXP_017441292.12e-86PREDICTED: protein Dr1 homolog isoform X1
RefseqXP_017441303.12e-86PREDICTED: protein Dr1 homolog isoform X3
RefseqXP_017441308.12e-86PREDICTED: protein Dr1 homolog isoform X3
SwissprotP495924e-66NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A1S3UV604e-85A0A1S3UV60_VIGRR; protein Dr1 homolog isoform X5
TrEMBLA0A1S3UVB75e-85A0A1S3UVB7_VIGRR; protein Dr1 homolog isoform X3
STRINGXP_007155169.18e-84(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47663358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.21e-68nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]