PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g12770.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 402aa    MW: 46418 Da    PI: 6.788
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g12770.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.81.4e-55571861129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                      +ppGfrFhPtdeelv +yL+kkv++k+++l +vik+vd+yk+ePwdL++  k+ ++e+ +wyfFs++dkky+tg+r+nratk+g+Wkatg+dk+
  Vradi07g12770.1  57 VPPGFRFHPTDEELVGYYLRKKVASKRIDL-DVIKDVDLYKIEPWDLQElcKIGTDEQsDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKA 149
                      69****************************.9***************954555554445*********************************** PP

              NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                      ++s k+ l+g++ktLvfykgrap+g+k+dW+mheyrle
  Vradi07g12770.1 150 IYS-KHCLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 186
                      ***.899*****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-6151206IPR003441NAC domain
PROSITE profilePS5100559.35157206IPR003441NAC domain
PfamPF023656.8E-2958185IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
FSSTLDTPRF SATNQFFVSS DPFQNSTWSL YIVISSEGAI YKGFNSLRAE MNTFSHVPPG  60
FRFHPTDEEL VGYYLRKKVA SKRIDLDVIK DVDLYKIEPW DLQELCKIGT DEQSDWYFFS  120
HKDKKYPTGT RTNRATKAGF WKATGRDKAI YSKHCLIGMR KTLVFYKGRA PNGQKSDWIM  180
HEYRLETNEN GTPPEEGWVV CRVFKKRMTT MQKVGEYDQS PCWYDEQVSF MQDFESPRRI  240
SQPYASYHQH HPCKPELMDL QYNNIPHDAF LQLPQLESPK LTHSAPSLSC SSVVPFAYET  300
SNNKNNGSTL QFSSLSQEEQ IQYCHQQSQN SLYDNAVDQV TDWRVLDKFV ASQLSHNQDV  360
SKETSYSNAP IFQVAEQISV FVLEIGNYLD LSESRSVRMK I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-494920711169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00136DAPTransfer from AT1G12260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g12770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507307.10.0NAC domain-containing protein 7
RefseqXP_022639166.10.0NAC domain-containing protein 7
SwissprotQ9FWX21e-143NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A1S3UMS70.0A0A1S3UMS7_VIGRR; NAC domain-containing protein 7
STRINGXP_007155625.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126933106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-145NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]