PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g05320.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 203aa    MW: 21912.5 Da    PI: 6.2745
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g05320.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.12.7e-07931321255
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Vradi07g05320.1  93 RREKISERMKILQDLVPGC----DKVIGKALVLDEIINYIQSLQ 132
                      9*****************9....555*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.6981131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1388148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-789137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.34E-793136No hitNo description
PfamPF000101.3E-493132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-1494150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MDPGGMMNEG SFGNNGSGNT APYSLAEIWQ FPQAINGGGG LGLRSPQFEH GPGQFGDLPP  60
RPNNGLGTSN TRKRRDSEDD SAKTVSTSNA VARREKISER MKILQDLVPG CDKVIGKALV  120
LDEIINYIQS LQRQVEFLSM KLEAVNSRLN SGIEAFPPKD FGQHAFDPAG MPFGSQAPRE  180
YSRGSSPEWL HMQVGGGFER TT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-137AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007153872.11e-106hypothetical protein PHAVU_003G072000g
SwissprotQ9LV171e-40BH079_ARATH; Transcription factor bHLH79
TrEMBLV7CAC21e-106V7CAC2_PHAVU; Uncharacterized protein
STRINGGLYMA08G40541.12e-71(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-64BIG PETAL P