PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g02240.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 363aa    MW: 39221.7 Da    PI: 8.1163
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g02240.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.43.3e-073758223
                     EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                     +C+ CgksFs++ +L  H+r+H
  Vradi07g02240.1 37 TCSVCGKSFSSRKSLFGHMRSH 58
                     6********************9 PP

2zf-C2H210.60.0018207226221
                      EETTTTEEESSHHHHHHHHH CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                      kC +C+++F+++ +L+ H+ 
  Vradi07g02240.1 207 KCRKCNTTFPSHQSLNDHLC 226
                      7*****************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015712.1133663IPR007087Zinc finger, C2H2
SMARTSM003556.6E-43658IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-63760IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.01E-93758No hitNo description
PfamPF139123.0E-73859IPR007087Zinc finger, C2H2
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
SuperFamilySSF576675.01E-9201226No hitNo description
SMARTSM0035586206226IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MRIHNLSRKR VHGEKQSTGD AAKSKTAKWV MVDGNPTCSV CGKSFSSRKS LFGHMRSHTE  60
KAKKGIQSNA PIVGASSNST SSSTLSDDLA VDLSRVLRGW SVTAKRGRIS SSCSKSDSGL  120
EEGDEIEPRM QEAAYELMLL ARGSPKCEQE VVADQIQEHP FNKRGREEEL SHPILGNSDD  180
VKIKKRNRKK VKLTELASSG EGNKLAKCRK CNTTFPSHQS LNDHLCIVQN SKNIQSRSHG  240
VSATKEEHDA KTTIQGEKTG AGTVLEGRAV EAMRGYECEV LNESFSIGQG FGDHKRSDWT  300
SMGEAGSAQA TSSNMGNGEN CSKVLSFDLN QIPAMDGEEG VQSDLFIPAA NIMTSSSYDS  360
SC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g02240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506202.10.0zinc finger protein ZAT1-like
TrEMBLA0A1S3UJI70.0A0A1S3UJI7_VIGRR; zinc finger protein ZAT1-like
STRINGXP_007156283.11e-165(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97372437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.12e-07C2H2 family protein