PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g16880.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 266aa    MW: 28926.9 Da    PI: 5.2647
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g16880.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.17.1e-163988255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +kGVr++  +g+WvAeIr+p  ng  +r +lg+f    eAa a++ a+++l+g
  Vradi06g16880.1 39 TFKGVRQRT-WGKWVAEIREP--NG-GARLWLGTFENSVEAAMAYDCAARQLYG 88
                     69****999.**********9..33.5***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.19E-283898No hitNo description
SMARTSM003809.0E-3239102IPR001471AP2/ERF domain
PROSITE profilePS5103220.4953996IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-193996IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.7E-284097IPR001471AP2/ERF domain
PRINTSPR003673.9E-84051IPR001471AP2/ERF domain
PfamPF008474.2E-114088IPR001471AP2/ERF domain
PRINTSPR003673.9E-86278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MLKSGMRMNA SKQVKKSAKA SSRKGCMRGK GGPENASCTF KGVRQRTWGK WVAEIREPNG  60
GARLWLGTFE NSVEAAMAYD CAARQLYGSD AKLNLPELHM ALALNFQFPP PNPQIPHMPP  120
SPQLQHSQIP PPSDISNLPP FDFINNLTDH TNIMFNPVLS MTPQHAIADS APVYASDSHV  180
AIPYESTTIP MAIHPSNPLD INDDKVDPFG GSSNVIPDPM FDDSIWAEAA MSLGFPLIPD  240
AAGINEAETF LEVGPWDSLQ TPWCM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-164096360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-164096663ATERF1
3gcc_A1e-164096663ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g16880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014503444.10.0ethylene-responsive transcription factor ERF110
TrEMBLA0A1S3UBV50.0A0A1S3UBV5_VIGRR; ethylene-responsive transcription factor ERF110
STRINGXP_007160709.11e-122(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.13e-42ERF family protein