PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g02390.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 288aa    MW: 33327.6 Da    PI: 8.1333
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g02390.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.75.9e-50211472128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                       pGfrFhPtdeelv +yL++kve+k+l++ e ik++diyk++PwdLp + + +ekewyfF+ r +ky+++ r+nr+t sg+Wkatg dk++++ 
  Vradi06g02390.1  21 LPGFRFHPTDEELVGFYLRRKVEKKPLRI-ELIKQIDIYKYDPWDLP-TSSVGEKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIYCV 112
                      69***************************.89***************.445689**************************************97 PP

              NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +e +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Vradi06g02390.1 113 kePHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 147
                      445566***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-5419171IPR003441NAC domain
PROSITE profilePS5100553.46320172IPR003441NAC domain
PfamPF023652.9E-2522147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDVPKLHNSD EEDKKEDEVV LPGFRFHPTD EELVGFYLRR KVEKKPLRIE LIKQIDIYKY  60
DPWDLPTSSV GEKEWYFFCI RGRKYRNSIR PNRVTGSGFW KATGIDKPIY CVKEPHECIG  120
LKKSLVYYRG SAGKGTKTDW MMHEFRLPPN GKSTTNDIQE AEVWTLCRIF KRVPSYKRYT  180
PNLKDSNTAP ITKPNPTNSS SSKTCSLESE TFTNSPSSLL LHQNQIIKPV FGHVDQHPPT  240
SFSYSTFWNH QNLELAHDEN WDDLTSVVQF AVDPSRLSDH CKEFNAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-482217819171NO APICAL MERISTEM PROTEIN
1ut4_B4e-482217819171NO APICAL MERISTEM PROTEIN
1ut7_A4e-482217819171NO APICAL MERISTEM PROTEIN
1ut7_B4e-482217819171NO APICAL MERISTEM PROTEIN
3swm_A5e-482217822174NAC domain-containing protein 19
3swm_B5e-482217822174NAC domain-containing protein 19
3swm_C5e-482217822174NAC domain-containing protein 19
3swm_D5e-482217822174NAC domain-containing protein 19
3swp_A5e-482217822174NAC domain-containing protein 19
3swp_B5e-482217822174NAC domain-containing protein 19
3swp_C5e-482217822174NAC domain-containing protein 19
3swp_D5e-482217822174NAC domain-containing protein 19
4dul_A4e-482217819171NAC domain-containing protein 19
4dul_B4e-482217819171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g02390.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0955301e-148BT095530.1 Soybean clone JCVI-FLGm-15A17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022637360.10.0transcription factor JUNGBRUNNEN 1 isoform X2
SwissprotQ9SK555e-93NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A3Q0EZZ10.0A0A3Q0EZZ1_VIGRR; transcription factor JUNGBRUNNEN 1 isoform X2
STRINGXP_007141427.11e-176(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.14e-88NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]