PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g22790.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 270aa    MW: 29902.2 Da    PI: 7.1307
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g22790.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.81.2e-05110165454
                      HHHHHHHHHHHHHHHHH.HHHHCTSCCC.......TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsaf.eeLrellPkas....kapskKlsKaeiLekAveYIksL 54 
                      a+  rE+ RRd++N++   +Lr +  ++s     ++ +K +K++iL  A + + +L
  Vradi05g22790.1 110 AKACREKMRRDKLNDRHaITLRLMFLELSsilePGRPPKTDKVAILSDAARVVVQL 165
                      6778***********98445666666655688777999**********99876665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-898180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889106165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.04E-5110170No hitNo description
Gene3DG3DSA:4.10.280.103.8E-9112178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.20.5.1706.0E-4179212No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MAFTWFLCTV TTLSSDTVHS SSLFLLASNM DMNSSTGASG WLYDYGFDIP VAGADFMVAA  60
DSAGFTWGPQ NHTLKGPSHT SLEMEYSLDS TVLENSPSKR LKTESCASGA KACREKMRRD  120
KLNDRHAITL RLMFLELSSI LEPGRPPKTD KVAILSDAAR VVVQLRNETE RLKEMNDELQ  180
GKVKELKAEK NELRDEKNML KEEKEKLEQQ VKLTNIQNSF LPQGPAAKGQ VGTHKLIPFI  240
GYPGIAMWQF MPPAAVDTSK DHLLRPPVA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0971261e-159BT097126.1 Soybean clone JCVI-FLGm-15N2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014500100.11e-171PREDICTED: transcription factor bHLH115-like
SwissprotQ9FH372e-69ILR3_ARATH; Transcription factor ILR3
TrEMBLA0A0L9UN771e-179A0A0L9UN77_PHAAN; Uncharacterized protein
STRINGGLYMA13G38140.11e-143(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF149161214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51070.12e-60bHLH family protein