PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g08690.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 85aa    MW: 9550.79 Da    PI: 8.533
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g08690.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.20.0003423501954
                     HHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH 19 afeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                       ++Lr+l+P+ +          + +L+++++YI+sL
  Vradi04g08690.1 23 LVSKLRQLVPEiR---------TSKVLQETCNYIRSL 50
                     5679999999966.........5678*********99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.6E-6768IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-71869IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MSSRRSRQHS GSTRISDDQI IELVSKLRQL VPEIRTSKVL QETCNYIRSL HREVSDLSER  60
LSQLLTTIDA DSAEAGIIRS LLNQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150377e-75AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003534454.13e-49PREDICTED: transcription factor PRE6
RefseqXP_007139582.13e-49hypothetical protein PHAVU_008G041800g
RefseqXP_014497381.13e-49PREDICTED: transcription factor PRE6-like
SwissprotQ9LJX11e-35PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A0B2PV333e-49A0A0B2PV33_GLYSO; Transcription factor bHLH135
TrEMBLA0A0L9U2593e-49A0A0L9U259_PHAAN; Uncharacterized protein
TrEMBLA0A0R0ICN43e-49A0A0R0ICN4_SOYBN; Uncharacterized protein
TrEMBLA0A0S3RS213e-49A0A0S3RS21_PHAAN; Uncharacterized protein
TrEMBLV7B5373e-49V7B537_PHAVU; Uncharacterized protein
STRINGGLYMA09G37370.19e-49(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.18e-37bHLH family protein