PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g08650.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 275aa    MW: 31038.2 Da    PI: 7.8268
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g08650.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.8e-1855107456
                      -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      + +++ eq+++Le+ Fe  +++  e++ +LAk lgL+ rq+ +WFqNrRa++k
  Vradi04g08650.1  55 KKRLNLEQVKALEKSFELGNKLEPERKVQLAKALGLQPRQIAIWFQNRRARWK 107
                      4568889*********************************************9 PP

2HD-ZIP_I/II123.59.8e-4053142190
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                      ekk+rl+ eqvk+LE+sFe  +kLeperKv+la++Lglqprq+a+WFqnrRAR+ktkqlEk+yeaLk++++a k++n+ L++++++L++e
  Vradi04g08650.1  53 EKKKRLNLEQVKALEKSFELGNKLEPERKVQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEALKKQFEAAKANNDVLKSQNQKLQAE 142
                      69*************************************************************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-1948111IPR009057Homeodomain-like
PROSITE profilePS5007116.50349109IPR001356Homeobox domain
SMARTSM003891.0E-1752113IPR001356Homeobox domain
CDDcd000864.70E-1654110No hitNo description
PfamPF000461.6E-1555107IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.8E-1957117IPR009057Homeodomain-like
PRINTSPR000319.4E-68089IPR000047Helix-turn-helix motif
PROSITE patternPS00027084107IPR017970Homeobox, conserved site
PRINTSPR000319.4E-689105IPR000047Helix-turn-helix motif
PfamPF021839.9E-10109142IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MLSENWVFFL NVAGGAPPLM LKRSMSFSGI ENKCDEVNGD DELSDDGNFQ CGEKKKRLNL  60
EQVKALEKSF ELGNKLEPER KVQLAKALGL QPRQIAIWFQ NRRARWKTKQ LEKEYEALKK  120
QFEAAKANND VLKSQNQKLQ AEGNMNLITA QNLGVSVTKL LFLILIQISV VCGLQAVKSR  180
GWCENGIISL KKETEGSWSN GSDNSSNINL ELSRGPIINN ATSCQAPFPT SITQIFQYSS  240
KPDFHEDDFC NVIHNIAEQQ NFWPWPGQQN HHFH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101109RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g08650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022635709.11e-172homeobox-leucine zipper protein ATHB-23 isoform X1
SwissprotQ8LC031e-59ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A3Q0EZC01e-171A0A3Q0EZC0_VIGRR; homeobox-leucine zipper protein ATHB-23 isoform X1
STRINGXP_007139587.11e-148(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127133106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.11e-55homeobox 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]