PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g03150.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 203aa    MW: 22806.7 Da    PI: 5.065
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g03150.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.34.3e-0685107729
                      HHHHHHHHHHHHHHHHHHCTSCC CS
              HLH   7 erErrRRdriNsafeeLrellPk 29 
                      + ErrRR r+++++  Lr+l+P+
  Vradi04g03150.1  85 ISERRRRGRMKEKLYALRSLVPN 107
                      78********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-778112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.16E-680115No hitNo description
Gene3DG3DSA:4.10.280.102.3E-680108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MDAIHQDTQA YINDFELHDF VDNPNFDQFI NLIRGENEDA NCDFGSDLIT DCFVNNQLLP  60
SPANPFDQNY NNAPKLKNDR SKTLISERRR RGRMKEKLYA LRSLVPNITK VEIVQVEERG  120
YYAKIVCNKG EGVAASLFRA LESLAGFSVR NSNLATVCNS FQLTFTLNIK GSEPEINLQN  180
LKLWVTGALL NQGFEFVASF SG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-106AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013464840.11e-70transcription factor
SwissprotQ0V7X46e-39FIT_ARATH; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLA0A072VL861e-70A0A072VL86_MEDTR; Transcription factor
STRINGGLYMA12G08640.13e-57(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36793358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.13e-40FER-like regulator of iron uptake