PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g02710.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 309aa    MW: 34970.4 Da    PI: 7.9414
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g02710.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM97.71.7e-30189354128
              NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++ls+ +++ +g+kk Lvfy+gr pkg+ktdW+m+eyrl
  Vradi04g02710.1  18 GEEEWYFFSPRDRKYPNGLRPNRAAASGYWKATGTDKPILSSsGSKRIGVKKALVFYSGRPPKGSKTDWIMNEYRL 93 
                      678*************************************9977888***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100539.2391124IPR003441NAC domain
SuperFamilySSF1019411.06E-3712124IPR003441NAC domain
PfamPF023651.6E-142093IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MKPFFCFCCE FADKSLFGEE EWYFFSPRDR KYPNGLRPNR AAASGYWKAT GTDKPILSSS  60
GSKRIGVKKA LVFYSGRPPK GSKTDWIMNE YRLIDTITKS PRLKGSMRVG ILLDDWVLCR  120
VRHKGYSSKI SGENQENPSE LNLSAKLPRS EGYPTNMNCR ADMITDYQYK DYQIIASILV  180
GAPVSPTENM PNMSFKGCKG TNLVSVFEDG LTKVNSQMTF PSLDSYFNPL TRKSNEDEQY  240
GNLISFNRKF NAEDKMDESP SRVLASRELN CYNQNQSEDD IFSGNPPDTG IDFQDLNDLV  300
FTGRYPQC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-431312964170NO APICAL MERISTEM PROTEIN
1ut4_B4e-431312964170NO APICAL MERISTEM PROTEIN
1ut7_A4e-431312964170NO APICAL MERISTEM PROTEIN
1ut7_B4e-431312964170NO APICAL MERISTEM PROTEIN
3swm_A4e-431312967173NAC domain-containing protein 19
3swm_B4e-431312967173NAC domain-containing protein 19
3swm_C4e-431312967173NAC domain-containing protein 19
3swm_D4e-431312967173NAC domain-containing protein 19
3swp_A4e-431312967173NAC domain-containing protein 19
3swp_B4e-431312967173NAC domain-containing protein 19
3swp_C4e-431312967173NAC domain-containing protein 19
3swp_D4e-431312967173NAC domain-containing protein 19
4dul_A4e-431312964170NAC domain-containing protein 19
4dul_B4e-431312964170NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g02710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014498121.20.0NAC transcription factor ONAC010
RefseqXP_017423161.10.0PREDICTED: NAC transcription factor 56-like
TrEMBLA0A0S3SGL10.0A0A0S3SGL1_PHAAN; Uncharacterized protein
STRINGXP_007150216.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24162981
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.14e-51NAC-like, activated by AP3/PI