PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0473s00050.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 191aa    MW: 22103.6 Da    PI: 4.7114
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0473s00050.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM113.22.7e-3581271128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGf+F Ptdeelvv++L++k++  +++  +vi+++++y ++Pw+L+ ++ ae k+wy++s+r         +nr+t +gyW   g +++v
  Vradi0473s00050.1   8 LPPGFHFYPTDEELVVHFLQRKANLLPCHP-DVIPDLELYPYDPWELHGRALAEGKQWYYYSRRT--------QNRVTGNGYWMPMGMEEPV 90 
                        79*************************999.99**************97777889*******984........58****************9 PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++ +++ vg+kk  vf+ g+ap+g+ t+W+m+eyrl
  Vradi0473s00050.1  91 ITSsSNKRVGMKKYYVFHVGEAPDGNTTNWIMQEYRL 127
                        98867788***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-474157IPR003441NAC domain
PROSITE profilePS5100544.6418158IPR003441NAC domain
PfamPF023651.5E-219127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MADNNVNLPP GFHFYPTDEE LVVHFLQRKA NLLPCHPDVI PDLELYPYDP WELHGRALAE  60
GKQWYYYSRR TQNRVTGNGY WMPMGMEEPV ITSSSNKRVG MKKYYVFHVG EAPDGNTTNW  120
IMQEYRLLDS ASSSRSSRRR PQPKPDHSKW VICRVYERDN DDDDGDGTEL SCLDEVFLSL  180
DDLEEISLPN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-41416013167NO APICAL MERISTEM PROTEIN
1ut4_B6e-41416013167NO APICAL MERISTEM PROTEIN
1ut7_A6e-41416013167NO APICAL MERISTEM PROTEIN
1ut7_B6e-41416013167NO APICAL MERISTEM PROTEIN
3swm_A6e-41416016170NAC domain-containing protein 19
3swm_B6e-41416016170NAC domain-containing protein 19
3swm_C6e-41416016170NAC domain-containing protein 19
3swm_D6e-41416016170NAC domain-containing protein 19
3swp_A6e-41416016170NAC domain-containing protein 19
3swp_B6e-41416016170NAC domain-containing protein 19
3swp_C6e-41416016170NAC domain-containing protein 19
3swp_D6e-41416016170NAC domain-containing protein 19
4dul_A6e-41416013167NAC domain-containing protein 19
4dul_B6e-41416013167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0473s00050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-142AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014492319.11e-142NAC domain-containing protein 104
RefseqXP_017431433.11e-142PREDICTED: NAC domain-containing protein 104-like
SwissprotQ8GWK62e-84NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A0L9TLG11e-140A0A0L9TLG1_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R0D21e-140A0A0S3R0D2_PHAAN; Uncharacterized protein
TrEMBLA0A1S3TEY61e-140A0A1S3TEY6_VIGRR; NAC domain-containing protein 104
STRINGXP_007159075.11e-140(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-81xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]