PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0425s00070.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 358aa    MW: 39996.8 Da    PI: 7.2711
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0425s00070.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.41.4e-49171431128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                        + pGfrF Ptdeel+++yL+kk++g++ ++ +vi+ev+++k+ePwdLp k++ ++++ew+fFs+r +ky++g++++rat+ gyWkatgk+++
  Vradi0425s00070.1  17 MFPGFRFCPTDEELISYYLRKKLDGHEESV-QVISEVELCKFEPWDLPaKSFIQSDNEWFFFSPRGRKYPNGSQSKRATECGYWKATGKERN 107
                        579************************988.99***************667777899*********************************** PP

                NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        v+s +++++g+k+tLvf+ grapkge+t+W+mhey +
  Vradi0425s00070.1 108 VKS-GSNVIGTKRTLVFHLGRAPKGERTEWIMHEYCI 143
                        ***.99*****************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-569158IPR003441NAC domain
PROSITE profilePS5100553.84117159IPR003441NAC domain
PfamPF023654.5E-2619142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0033619Biological Processmembrane protein proteolysis
GO:0048573Biological Processphotoperiodism, flowering
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEGVSREAQM SIAASSMFPG FRFCPTDEEL ISYYLRKKLD GHEESVQVIS EVELCKFEPW  60
DLPAKSFIQS DNEWFFFSPR GRKYPNGSQS KRATECGYWK ATGKERNVKS GSNVIGTKRT  120
LVFHLGRAPK GERTEWIMHE YCINDKSQDS LVICRLKRNT EFRLSDHSNR ASSSQRHHVN  180
SHESGCAISE GGGIDQRDVC EQDKEVGCSS KRSSSSYGSP SNEQIDSVSE SNHRPVNEAT  240
LTESSDQAKE VYEEDCYAEI LKDDIIKLDE SSISAEGHTG AHDPAQMHPA QGTAKRRIRL  300
RVGNSKRSSP AVVGFRSTIM QSSKSTFFAG ISNSLVALVF LVFTLIFLVF VGWKFVC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-461615816164NO APICAL MERISTEM PROTEIN
1ut4_B2e-461615816164NO APICAL MERISTEM PROTEIN
1ut7_A2e-461615816164NO APICAL MERISTEM PROTEIN
1ut7_B2e-461615816164NO APICAL MERISTEM PROTEIN
3swm_A2e-461615819167NAC domain-containing protein 19
3swm_B2e-461615819167NAC domain-containing protein 19
3swm_C2e-461615819167NAC domain-containing protein 19
3swm_D2e-461615819167NAC domain-containing protein 19
3swp_A2e-461615819167NAC domain-containing protein 19
3swp_B2e-461615819167NAC domain-containing protein 19
3swp_C2e-461615819167NAC domain-containing protein 19
3swp_D2e-461615819167NAC domain-containing protein 19
4dul_A2e-461615816164NAC domain-containing protein 19
4dul_B2e-461615816164NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00280DAPTransfer from AT2G27300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0425s00070.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-161AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022632164.10.0NAC domain-containing protein 40
SwissprotQ9XIN75e-96NAC40_ARATH; NAC domain-containing protein 40
TrEMBLA0A3Q0EP370.0A0A3Q0EP37_VIGRR; NAC domain-containing protein 40
STRINGGLYMA13G39090.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73153346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.15e-98NTM1-like 8
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. Tian H, et al.
    NTL8 Regulates Trichome Formation in Arabidopsis by Directly Activating R3 MYB Genes TRY and TCL1.
    Plant Physiol., 2017. 174(4): p. 2363-2375
    [PMID:28649093]