PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g03820.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 245aa    MW: 26610.5 Da    PI: 7.0695
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g03820.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.00126284123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C+++F++   L  H  +H
  Vradi03g03820.1 62 YECKTCNRCFPSFQALGGHRASH 84
                     99**********99999998887 PP

2zf-C2H214.10.00014149171123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  Fs+   L  H+r+H
  Vradi03g03820.1 149 HECSICGAEFSSGQALGGHMRRH 171
                      78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.7E-116185IPR007087Zinc finger, C2H2
SuperFamilySSF576676.9E-96184No hitNo description
SMARTSM003550.146284IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.2656284IPR007087Zinc finger, C2H2
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SuperFamilySSF576676.9E-9144171No hitNo description
Gene3DG3DSA:3.30.160.608.6E-4147171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01149171IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743149171IPR007087Zinc finger, C2H2
PfamPF139121.4E-12149172IPR007087Zinc finger, C2H2
PROSITE patternPS000280151171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSTCSTAGRS STDNSAAFEP PTTSNELRNE EDEDLANCLI LLARGHTTPK PSHGKESGLY  60
VYECKTCNRC FPSFQALGGH RASHKRFSKA GAEEKQGLVT TFGDNSSKNY HDDYCVPTST  120
TLTLQLSTVL YNSSNSTRSS TVNAKSKIHE CSICGAEFSS GQALGGHMRR HRNFLSSPSS  180
GAIAYAGDGI PEIPEIKKQK DVLNLDLNLP APEDDHHRES NLFPFKSKEK VIVFSATSLV  240
DCHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g03820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495612.10.0zinc finger protein ZAT11
TrEMBLA0A1S3TPG00.0A0A1S3TPG0_VIGRR; zinc finger protein ZAT11
STRINGXP_007162794.11e-149(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.15e-50C2H2 family protein