PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g03400.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 329aa    MW: 37400.2 Da    PI: 7.8692
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g03400.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM134.57.3e-42421551128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhP+deel+v+yL++kv++++l+  ++i+e+d+yk++Pw+L+              + d+ky++g r+nra++sgyWkatg+d+++++
  Vradi03g03400.1  42 LPPGFRFHPSDEELIVHYLRNKVTSSPLPG-SFIAEIDLYKYNPWELQ--------------SLDRKYPNGVRPNRAAASGYWKATGTDRPIFT 120
                      79***************************9.89**************7..............4689***************************9 PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + + +++g+kk Lvfykgrapkg+ktdW+mheyrl
  Vradi03g03400.1 121 ScGMKNIGVKKALVFYKGRAPKGSKTDWIMHEYRL 155
                      977888***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-5238181IPR003441NAC domain
PROSITE profilePS5100548.29642181IPR003441NAC domain
PfamPF023651.7E-2243155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MLAIQHGTNA LLSKSLTPIY LFLQRRYIFI FMDKDGNSEI RLPPGFRFHP SDEELIVHYL  60
RNKVTSSPLP GSFIAEIDLY KYNPWELQSL DRKYPNGVRP NRAAASGYWK ATGTDRPIFT  120
SCGMKNIGVK KALVFYKGRA PKGSKTDWIM HEYRLHNSMN SISQQRSMRL DEWVLCRVRQ  180
KTSNTRNNWE ECIYEATSQF EEMNENSNPE AAKNSVHDEY PLLPYILASV SDSIGLASSS  240
GCGCNDDASL HDKNSNVMIG GEFMAAEGLF NPLKRKNSKE KELELYASLN KKLSEEHDDL  300
NKDCNSNNFD HSGLPSYYPK SLISSLYH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-54331916174Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g03400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-170AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017416921.10.0PREDICTED: NAC transcription factor 25-like
TrEMBLA0A0S3RYN70.0A0A0S3RYN7_PHAAN; Uncharacterized protein
STRINGGLYMA19G36421.11e-144(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24162981
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-66NAC domain containing protein 25