PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g07590.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 184aa    MW: 21153.5 Da    PI: 8.45
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g07590.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.62.2e-2739042128
              NAM  42 vePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +P  L  + +++++++w+fFs+ ++++a+g r++r+t+sgyWkatg+   v+s++++++g+kk++vfykg+ap g+kt+W m+eyr+
  Vradi02g07590.1   3 DHPPALAgELCRGDTEQWFFFSPGQEREARGGRPSRTTASGYWKATGSPGYVYSSDNRVIGVKKSMVFYKGKAPMGRKTKWKMNEYRA 90 
                      5888998555666778**********************************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100531.1371111IPR003441NAC domain
SuperFamilySSF1019413.79E-294109IPR003441NAC domain
PfamPF023658.3E-13689IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MEDHPPALAG ELCRGDTEQW FFFSPGQERE ARGGRPSRTT ASGYWKATGS PGYVYSSDNR  60
VIGVKKSMVF YKGKAPMGRK TKWKMNEYRA ISNPVTPQLR CEFSLYRVYI VSGSFRAFDR  120
RPSETDGTES RFCQSSSQLR QLSQLSQLPE TGDSSSRNWN EEQLQEPSWE LEWEHFNWVE  180
LKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-1979166143NO APICAL MERISTEM PROTEIN
1ut4_B4e-1979166143NO APICAL MERISTEM PROTEIN
1ut7_A4e-1979166143NO APICAL MERISTEM PROTEIN
1ut7_B4e-1979166143NO APICAL MERISTEM PROTEIN
3swm_A4e-1979169146NAC domain-containing protein 19
3swm_B4e-1979169146NAC domain-containing protein 19
3swm_C4e-1979169146NAC domain-containing protein 19
3swm_D4e-1979169146NAC domain-containing protein 19
3swp_A4e-1979169146NAC domain-containing protein 19
3swp_B4e-1979169146NAC domain-containing protein 19
3swp_C4e-1979169146NAC domain-containing protein 19
3swp_D4e-1979169146NAC domain-containing protein 19
4dul_A4e-1979166143NAC domain-containing protein 19
4dul_B4e-1979166143NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g07590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-148AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014493634.11e-129NAC domain-containing protein 90
SwissprotQ9FMR34e-61NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A1S3TIN11e-128A0A1S3TIN1_VIGRR; NAC domain-containing protein 90
STRINGXP_007132453.11e-103(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.23e-64NAC domain containing protein 61
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]