PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g06990.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YB
Protein Properties Length: 127aa    MW: 14345.3 Da    PI: 4.8332
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g06990.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB331.4e-10592688
            NF-YB  6 rflPianvsrimkkvlP...anak..iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88
                     ++lP + v r++k  l    +++   +skd      e    fi ++++ a+d c++ kr+ ++++d++ al +  f ++v plk+ l+
  Vradi02g06990.1  5 EELPRSIVRRVVKDKLSrcsEEGEisVSKDGLLAFSESGRIFIHYLSATANDICKESKRQIVSAEDVFKALEETEFSEFVRPLKASLE 92
                     6789999999999988622234541156788888899999********************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.0E-24393IPR009072Histone-fold
PfamPF008082.0E-7675IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.02E-18792IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MAEAEELPRS IVRRVVKDKL SRCSEEGEIS VSKDGLLAFS ESGRIFIHYL SATANDICKE  60
SKRQIVSAED VFKALEETEF SEFVRPLKAS LEASTYNPDL LTSLLTSLLE SNRFQDMKWS  120
LRISYF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g06990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0904513e-90BT090451.1 Soybean clone JCVI-FLGm-4D13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014493538.12e-59DNA polymerase epsilon subunit 3
TrEMBLA0A1S3TID45e-58A0A1S3TID4_VIGRR; DNA polymerase epsilon subunit 3
STRINGXP_007132441.14e-57(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118633236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.12e-38nuclear factor Y, subunit B11