PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g06340.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 303aa    MW: 32442.9 Da    PI: 8.4164
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g06340.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00069131153123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C+++F++   L  H  +H
  Vradi02g06340.1 131 YECKTCNRTFPSFQALGGHRASH 153
                      99**********99999998887 PP

2zf-C2H213.60.00019206228123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  Fs+   L  H+r+H
  Vradi02g06340.1 206 HECSICGSEFSSGQALGGHMRRH 228
                      78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.7E-13131155IPR007087Zinc finger, C2H2
SMARTSM003550.052131153IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.46E-9131153No hitNo description
PROSITE profilePS5015710.305131158IPR007087Zinc finger, C2H2
PROSITE patternPS000280133153IPR007087Zinc finger, C2H2
SuperFamilySSF576678.46E-9201228No hitNo description
PfamPF139121.4E-11206230IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.159206233IPR007087Zinc finger, C2H2
SMARTSM003550.02206228IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280208228IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEGLDSNSNS NSYSSSAQSN IAKGKRTKRM RLLSPSGVVV VTTAATTGVT TSCSSPNSGG  60
SSTTTCESEE EDMANCLILL AQGGESHSHQ PRHHRQQVED HNGVKTAKGN ANTITTTATT  120
AVDTKVGFFI YECKTCNRTF PSFQALGGHR ASHKKPKLSP EEKKPPPSQS PHVAVTTYDR  180
FEEDNVKSGP PISLQLGHGN NKGKIHECSI CGSEFSSGQA LGGHMRRHRS STNTNTVDTS  240
SSNTVIGVAT TVSPPRNVLE LDLNLPAPED DIREAKFQFP VNGAKRSMWT RTLREVSECI  300
TT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g06340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014493277.10.0zinc finger protein AZF2
TrEMBLA0A1S3THP50.0A0A1S3THP5_VIGRR; zinc finger protein AZF2
STRINGXP_007132339.11e-151(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-35C2H2 family protein