PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g03790.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 865aa    MW: 99619.6 Da    PI: 9.0481
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g03790.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.83.9e-13431181799
                      E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       +p  f+++ +++    +  +l  +sg  W+v++   kk++ +++ +GW +F  +n +   Df++F+++g ++f  +v++f k
  Vradi02g03790.1  43 KVPEGFLKHLNED---FQNAVLIGPSGDNWQVTI--LKKGNNIYMHNGWPQFLTDNSVMIDDFLLFTYHGGNCF--HVQIFGK 118
                      6788888444433...3479**************..9********************************99***..***9987 PP

2B361.41.5e-19205298499
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                       +t+ +v  ++ l +  +fa++h   +e+ k+++l +++g+ Wev +++  +++++ + +t+GW +Fv++n+L  gD+++F+l++  + +l v+
  Vradi02g03790.1 205 LMTKCNVEDHCTLPIATEFARKHI--PETVKQIVLWNTEGKFWEVVVTWfgCQNKRYTRFTTGWGRFVRDNRLMRGDTCIFELED--QNHLSVH 294
                      677889999**************4..334457*****************8877777799***********************965..66679** PP

                      EE-S CS
               B3  96 vfrk 99 
                      +fr+
  Vradi02g03790.1 295 IFRT 298
                      9996 PP

3B353.64e-17338428399
                      EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                        +t+ +v  ++ l +  kfa+++   +ee k++ + +++g  W+v ++++++     +++GW++Fv++n+L  gD+++F+l+  ++ +l+v++
  Vradi02g03790.1 338 HLMTKCHVEGRCVLPIATKFARKYI--PEEVKQIHIGNSEGTLWKVHVSWSRGY--AHFATGWSNFVRDNKLMRGDTCIFELE--ENLHLRVHI 425
                      56788899999*************4..3344579**************765555..34788********************85..678889999 PP

                      E-S CS
               B3  97 frk 99 
                      f++
  Vradi02g03790.1 426 FKT 428
                      986 PP

4B347.63e-154515251797
                      E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      +lp +f++++gg+   s  +tl  ++g +W+v l  +k +++y++++GW+eF +   + +g  +vF+++g+s+f  +v+vf
  Vradi02g03790.1 451 RLPDDFMRKYGGE--LSPIVTLSVPDGSVWRVGL--KKADNKYWFRDGWQEFIQHYSIGVGYLLVFRYEGKSGF--NVHVF 525
                      79********887..7779***************..**********************************9999..77777 PP

5B353.64.1e-17730820498
                      E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      vl ps+  + ++++lp  fae+h +g++     ++l+ ++gr+W v++ yr ++    l++GW eF  +n+L egD++vF+l + +e  l v++
  Vradi02g03790.1 730 VLRPSYLYRGCIMYLPSCFAEKHlNGVSG---FIKLQISNGRQWPVRCLYRVGR--AKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLQVTI 818
                      78899******************877743...59**************777776..55***********************9988888899999 PP

                      E- CS
               B3  97 fr 98 
                      fr
  Vradi02g03790.1 819 FR 820
                      97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.4227119IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-1727119IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-1628120IPR015300DNA-binding pseudobarrel domain
CDDcd100172.41E-1030116No hitNo description
SMARTSM010197.7E-1332119IPR003340B3 DNA binding domain
PfamPF023621.1E-943118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.0E-23194297IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-22197298IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.339202299IPR003340B3 DNA binding domain
SMARTSM010191.0E-8202299IPR003340B3 DNA binding domain
PfamPF023624.2E-16205298IPR003340B3 DNA binding domain
CDDcd100171.47E-17206297No hitNo description
Gene3DG3DSA:2.40.330.102.1E-21328429IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-21329428IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.015336429IPR003340B3 DNA binding domain
SMARTSM010197.5E-7336429IPR003340B3 DNA binding domain
PfamPF023623.4E-14339428IPR003340B3 DNA binding domain
CDDcd100174.35E-13340427No hitNo description
SMARTSM010193.4E-9447528IPR003340B3 DNA binding domain
CDDcd100171.12E-14451526No hitNo description
PfamPF023621.5E-12451525IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-18451526IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.5E-19451526IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.843452528IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-23719820IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-23720821IPR015300DNA-binding pseudobarrel domain
CDDcd100176.66E-20725820No hitNo description
SMARTSM010192.3E-14727822IPR003340B3 DNA binding domain
PROSITE profilePS5086313.606727822IPR003340B3 DNA binding domain
PfamPF023624.1E-15730820IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 865 aa     Download sequence    Send to blast
MRDFSFYQKA LIVQGNGREM WQMDYYRGNP VFFVIINNSK LQKVPEGFLK HLNEDFQNAV  60
LIGPSGDNWQ VTILKKGNNI YMHNGWPQFL TDNSVMIDDF LLFTYHGGNC FHVQIFGKNG  120
LERLCFKQTR QDQVLIPSLV RTKKNTHRRT SSSPFLHQAK PCKKGLSFSN KFSFSKLKSS  180
VKIESSEACY LADSFTSRNP HWKHLMTKCN VEDHCTLPIA TEFARKHIPE TVKQIVLWNT  240
EGKFWEVVVT WFGCQNKRYT RFTTGWGRFV RDNRLMRGDT CIFELEDQNH LSVHIFRTGF  300
YLSPPKDFPT PQHSVDIESS EALKLAESFT SSKPYWKHLM TKCHVEGRCV LPIATKFARK  360
YIPEEVKQIH IGNSEGTLWK VHVSWSRGYA HFATGWSNFV RDNKLMRGDT CIFELEENLH  420
LRVHIFKTRC APKDWLSGCE EKSENFFWDK RLPDDFMRKY GGELSPIVTL SVPDGSVWRV  480
GLKKADNKYW FRDGWQEFIQ HYSIGVGYLL VFRYEGKSGF NVHVFNLATS EINYQSAIRC  540
SNEGPHFANL LKFFEEMDDE DSIEILDSSP SHLAPSSLQR VLACSVDKMS PAKSYTPPAL  600
QNLFNGSKLN SINWGEGGDA HCSKSANSLD NRFTRDIGVQ FNAVEFKRST EELKLRASME  660
ERMKKTARKK RKSGLDGQEA SAEQEEEVDM RFRFYESASA RKRTVTAEER ERAISAAKAF  720
EPPNPFCRVV LRPSYLYRGC IMYLPSCFAE KHLNGVSGFI KLQISNGRQW PVRCLYRVGR  780
AKLSQGWFEF SLENNLGEGD VCVFELLRMK EVVLQVTIFR ITEEVGMLKP PPSQQNQNMS  840
SAKLLNNPLQ QHLSSTQMGD FIGT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-6869382515146B3 domain-containing transcription factor VRN1
4i1k_B5e-6869382515146B3 domain-containing transcription factor VRN1
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g03790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A4D6LII40.0A0A4D6LII4_VIGUN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-111B3 family protein