PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0215s00270.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 736aa    MW: 81538.6 Da    PI: 6.5153
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0215s00270.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-162468147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       r rWT+eE+ ++++a k++G   W +I +++g ++t+ q++s+ qk+
  Vradi0215s00270.1 24 RERWTEEEHNRFLEALKLHGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68
                       78******************88.*********.************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.21E-161872IPR009057Homeodomain-like
PROSITE profilePS5129419.9131973IPR017930Myb domain
TIGRFAMsTIGR015571.1E-152271IPR006447Myb domain, plants
SMARTSM007171.3E-122371IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-82464IPR009057Homeodomain-like
PfamPF002491.8E-132467IPR001005SANT/Myb domain
CDDcd001671.41E-92669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MDAYSSGEEV VVKTRKPYTI TKQRERWTEE EHNRFLEALK LHGRAWQRIE EHIGTKTAVQ  60
IRSHAQKFFT KIADSRAKWY RGLDKPYLGK WLSGADGGGF LFQEHILEEI HRLIDHHDKS  120
AVPTLGTGKF RDTLEKEALV KGVPIGQALD IDIPPPRPKR KPSNPYPRKT RIGTATLHSG  180
AKDGKLNLVE SSHDNQALDL EKEPLPEIYD LDEGPTTVKE NKDENCSKVF TVIQEVPCSS  240
LSSANRSSIS MSVPLGNSCV FKEITTSAKE VITRDEKTES FLTVELENGN LEINDGKQAN  300
GTSKNSTLEN SDALQMKLVQ NEKTDGLDSA LTIEGMQGNN QNYPRHVTVH VVDGNLGTCT  360
QNPSQDMLFR DCMFQPIGGA NGQPHLFTNS APSNTRESQN NTARSSAHQS FLPYPPFTQH  420
NQDDYQSFLH MSSTFSNLIV STLLQNPAAH AAAIASMNTA ETPSLKADQE KSTLQNPPLH  480
DQMMHPEYSE APQAQHSASK SLAVISSDSE SGDAKLNTSP KATDHETNEI ISEHLDSNKT  540
KGRKQVDRSS CGSNTASSSD VETDALGKDE KGKEEPETPD ANHLALEFSN RRRSICNLTD  600
SWKEVSEEGK LAFQALFSRE VLPQSFSPPH ALKNKDQMGI ITNDNQQTID DRNEDLDSKK  660
CSSNYKPMQK NPPFVENNVG LLTLGLGQGK LKTRRTGFKP YKRCSMEAKE NRIGASNQGE  720
EKGCKRIRLE GDTST*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00119DAPTransfer from AT1G01060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0215s00270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4209020.0AJ420902.2 Phaseolus vulgaris mRNA for LHY protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028216411.10.0protein LHY-like isoform X3
RefseqXP_028216412.10.0protein LHY-like isoform X3
TrEMBLA0A0B2PPQ50.0A0A0B2PPQ5_GLYSO; Protein LHY
STRINGGLYMA19G45030.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48602537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.33e-41MYB_related family protein