PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0214s00100.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 159aa    MW: 17833 Da    PI: 6.4987
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0214s00100.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000116081122
                       EEETTTTEEESSHHHHHHHHHH CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirt 22
                       y+C+ C k F++   L  H+++
  Vradi0214s00100.1 60 YTCSFCRKEFKSAQALGGHMNR 81
                       9***************999985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.3E-56079IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MKDYTHTCAN NNPSKDFTHV VNCYTKQNQM AKDLWECSSN SHTNADQDYV NGFPWPPRSY  60
TCSFCRKEFK SAQALGGHMN RWVVVDGILL NPLSTNTPEH SKSKIPESLS AGVGEYDHAF  120
AREDGCTVLK KGEILRMDLE IGLPRTYDLD LELRLGTT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0214s00100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-115AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521520.13e-55transcriptional regulator SUPERMAN-like
TrEMBLA0A1S3VT877e-54A0A1S3VT87_VIGRR; transcriptional regulator SUPERMAN-like
STRINGXP_007149575.13e-50(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.13e-17C2H2 family protein