PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0201s00170.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 157aa    MW: 18054 Da    PI: 4.732
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0201s00170.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM583.4e-18168254128
                NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        + +++yfF+k         ++nr+t++g Wk+ g +++++s+ +++vg+kk Lvf+ g+ap+ ++t+Wvm+ey++
  Vradi0201s00170.1  16 SGNQYYFFTKV--------NENRTTENGCWKEIGVTEPIFSTFDKKVGTKKYLVFHIGEAPHVTETNWVMQEYHI 82 
                        45667777765........5689*******************99*****************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.6381116IPR003441NAC domain
SuperFamilySSF1019411.05E-2210115IPR003441NAC domain
PfamPF023655.8E-112082IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MEDASFNLPP GKALLSGNQY YFFTKVNENR TTENGCWKEI GVTEPIFSTF DKKVGTKKYL  60
VFHIGEAPHV TETNWVMQEY HICSSGFDTA SYGSSRRRRK HDQSWSQWVL CRVYEKMRSE  120
GVNCYSDDDD SGSELSWLDE VYLSLDDDLE KFGMPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-181011963168NO APICAL MERISTEM PROTEIN
1ut4_B8e-181011963168NO APICAL MERISTEM PROTEIN
1ut7_A8e-181011963168NO APICAL MERISTEM PROTEIN
1ut7_B8e-181011963168NO APICAL MERISTEM PROTEIN
3swm_A9e-181011966171NAC domain-containing protein 19
3swm_B9e-181011966171NAC domain-containing protein 19
3swm_C9e-181011966171NAC domain-containing protein 19
3swm_D9e-181011966171NAC domain-containing protein 19
3swp_A9e-181011966171NAC domain-containing protein 19
3swp_B9e-181011966171NAC domain-containing protein 19
3swp_C9e-181011966171NAC domain-containing protein 19
3swp_D9e-181011966171NAC domain-containing protein 19
4dul_A8e-181011963168NAC domain-containing protein 19
4dul_B8e-181011963168NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0201s00170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312091e-148KT031209.1 Glycine max clone HN_CCL_4 NAC transcription factor (Glyma04g38990.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014492266.11e-106NAC domain-containing protein 104
TrEMBLA0A1S3TET61e-105A0A1S3TET6_VIGRR; NAC domain-containing protein 104
STRINGXP_007137797.12e-86(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.14e-34xylem NAC domain 1