PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g08680.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 206aa    MW: 23622.7 Da    PI: 9.9242
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g08680.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM100.62.2e-31121281128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lp GfrF+Ptd+el+ +yLkkk+ +++l++ +vi+ +d+++++Pw Lp  +   +++ yfFs+  k       ++r++ sg Wk  gk+ke+ +
  Vradi01g08680.1  12 LPIGFRFRPTDQELLLYYLKKKAFAQPLPA-SVIPICDVFQSDPWLLPGDL---REKRYFFSNYGK------VNKRSAGSGCWKCVGKEKEIRV 95 
                      699***************************.99***************543...4578***98755......568999**************98 PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++e++g+kktL+f kg++++  +t+Wvmhe rl
  Vradi01g08680.1  96 CdSNEVIGMKKTLIFCKGSHQT--RTRWVMHELRL 128
                      757788**********888877..9*******987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.2E-377156IPR003441NAC domain
PROSITE profilePS5100537.45712156IPR003441NAC domain
PfamPF023654.3E-2113128IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MEGFVVKEDI KLPIGFRFRP TDQELLLYYL KKKAFAQPLP ASVIPICDVF QSDPWLLPGD  60
LREKRYFFSN YGKVNKRSAG SGCWKCVGKE KEIRVCDSNE VIGMKKTLIF CKGSHQTRTR  120
WVMHELRLVT SYAYKNSSIL LQMAVADFAV YVIFQKRKKM TKASQQRPFC SSKLQRVHDV  180
KASIIDFEME FGHDNIVLPP PSSPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-2261629174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g08680.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-101AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014508033.11e-145NAC domain-containing protein 83 isoform X1
SwissprotQ9FY936e-38NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A1S3UPM91e-144A0A1S3UPM9_VIGRR; NAC domain-containing protein 83 isoform X1
STRINGXP_007151796.11e-103(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.16e-35NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]