PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g03390.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 284aa    MW: 31850.2 Da    PI: 8.6934
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g03390.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.41.2e-35211613128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tks 80 
                       G++F+Ptd+el+ e+L++kve+k+++ +        +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+          +
  Vradi01g03390.1  21 TGVKFDPTDQELI-EHLEAKVEAKNMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqnecdlqGGE 112
                      7************.99*********5553344444434666646**********.555666799******************845555544337 PP

              NAM  81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Vradi01g03390.1 113 TRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 161
                      78************.999***********5547999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-3719180IPR003441NAC domain
PROSITE profilePS5100531.33519180IPR003441NAC domain
PfamPF023652.6E-1621161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MPSLKSINCV DPSSALVADT TGVKFDPTDQ ELIEHLEAKV EAKNMKSHPL IDEFIPTIEG  60
EDGICYTHPE KLPGVTRDGL SRHFFHRPSK AYTTGTRKRR KIQNECDLQG GETRWHKTGK  120
TRPVMVNGKQ KGCKKILVLY TNFGKNRKPE KTNWVMHQYH LGQHEEEKEG ELVVSKIFYQ  180
TQPRQCNWSD RSATTGEGSG EPNNSSRRDS GSGSCSSKEI ATHRDEMSAV MCALNLIVDL  240
GKCIYGICTL CSSNNNIIIS LEEGLRLVWR NSSWVALQLK SKR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g03390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017437876.11e-154PREDICTED: NAC domain-containing protein 73
SwissprotQ9M0F81e-114NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A4D6LU641e-152A0A4D6LU64_VIGUN; Uncharacterized protein
STRINGGLYMA01G00880.11e-152(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45203458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-117NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]