PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0185s00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 497aa    MW: 54630.4 Da    PI: 6.6153
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0185s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-11312354754
                        HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  Vradi0185s00010.1 312 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 354
                        79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.764305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16308372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-9311354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-16312367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.70E-12312358No hitNo description
CDDcd048731.57E-6425485No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MMSRMNTVGW MEEREDDNNS ASWPRNKPTN AIIATDTTPT TKPPTTAAAF VENNTTRDDL  60
ASLCAFKPML ELDDEWYISN HHHHHNSHHP QDMTFSPTFP DSDNLLLPAV DSSSSCSPSS  120
SVFTNLDPSS SHLHYFLPPK PPTLSSLINP FDISFLDPQA SSSFPLLPSA HFPSDTPPQT  180
ATAFAGFHSL EDGSSKPLFH QRSKILRPLE SLPPSGAPPT LFQKRAALRK NMSAGEGSEK  240
KRKEREEVVE DVSFDGSGLN YDSDDLTEIN NNSGRVDEGS AKNGGNSSNA NSSVTGLDQK  300
GKKKGMPAKN LMAERRRRKK LNDRLYMLRS VVPKISKMDR ASILGDAIEY LKELLQRIND  360
LHNELESTPP GSSLTPSSNF HPLTPTPPTL PSRIKEELCP SSLPSPNAQP ARVEVRLREG  420
RAVNIHMFCA RKPGLLLSTM RAMDNLGLDI QQAVISCFNG FAMDIFRAEQ CKEGQDVHPE  480
QIKAVLLDSA GYSGMM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1301319KKKGMPAKNLMAERRRRKK
2313320ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014522347.10.0PREDICTED: transcription factor SCREAM2-like
SwissprotQ9LSE21e-133ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0L9UEB10.0A0A0L9UEB1_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RF390.0A0A0S3RF39_PHAAN; Uncharacterized protein
STRINGGLYMA04G37750.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-115bHLH family protein