PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0122s00050.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 229aa    MW: 24068.2 Da    PI: 8.6835
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0122s00050.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.16.8e-39151151100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                        +C aCk+lrrkC ++C++apyf +eq + +fa vhk+FGasnv+kll ++p ++r da+ +++yeA+ r+rdPvyG+v++i++lqqq+ +l+
  Vradi0122s00050.1  15 PCGACKFLRRKCIQGCIFAPYFDSEQgTTHFASVHKVFGASNVSKLLLSIPVHKRLDAVITICYEAQSRLRDPVYGCVSHIFALQQQVVSLQ 106
                        7***********************9988**************************************************************** PP

             DUF260  92 aelallkee 100
                        ael++l+ +
  Vradi0122s00050.1 107 AELSYLQGH 115
                        ****99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.73414116IPR004883Lateral organ boundaries, LOB
PfamPF031953.2E-3815113IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
TGSGNGSGNG NSGSPCGACK FLRRKCIQGC IFAPYFDSEQ GTTHFASVHK VFGASNVSKL  60
LLSIPVHKRL DAVITICYEA QSRLRDPVYG CVSHIFALQQ QVVSLQAELS YLQGHLAQME  120
GPHPAPPPPS QPATALRFSM ADLPSAATGA VAPATTYDLS SLFDTSGQIS WAMQQRAFDP  180
RQYVAAPPSS STRANVEAVA RDLPRRHGSP PSPPASSCNA SPSLSLSK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014490267.11e-167PREDICTED: LOB domain-containing protein 18-like
SwissprotO221311e-71LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A0L9U3C31e-137A0A0L9U3C3_PHAAN; Uncharacterized protein
STRINGGLYMA18G45320.12e-96(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.11e-68LOB domain-containing protein 18