PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0086s00060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 287aa    MW: 32857.2 Da    PI: 8.8079
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0086s00060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.31.6e-32551951128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..... 79 
                        lp+G++F+Ptd+e++ e+L++kv+++ ++l+        +++   +i+ ++P++Lp  v+++    +fF++ +k+y+tg+rk+r+++     
  Vradi0086s00060.1  55 LPAGVKFDPTDQEIL-EHLEAKVRSDIHKLHPlidefipTLEGEnGICCTHPEKLP-GVSKDGLIRHFFHRPSKAYTTGTRKRRKVHtdadg 144
                        799***********9.99*****99984443333332222333336**********.555555677******************74444655 PP

                NAM  80 .sgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                         + +W++tgk+++v+  +g+l+g kk+Lv+y++  +++k+ekt+Wvmh+y+l
  Vradi0086s00060.1 145 sETRWHKTGKTRPVYI-SGKLKGYKKILVLYTNyrKQRKPEKTNWVMHQYHL 195
                        5788************.999***********5444788889*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-3750214IPR003441NAC domain
PROSITE profilePS5100532.70455214IPR003441NAC domain
PfamPF023651.5E-1556195IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MRIYNKEMTQ CSYPENNHTI IVERHKDSFI RTCPTCGHHI KCQEQAAGIH DLPGLPAGVK  60
FDPTDQEILE HLEAKVRSDI HKLHPLIDEF IPTLEGENGI CCTHPEKLPG VSKDGLIRHF  120
FHRPSKAYTT GTRKRRKVHT DADGSETRWH KTGKTRPVYI SGKLKGYKKI LVLYTNYRKQ  180
RKPEKTNWVM HQYHLGNNEE EKEGELVVSK VFYQTQPRQC GSLMKDSYPA KLNGESVHEV  240
TNHKSTGFVE FYNNSFVSFD QGDQHRPSSA QLVTHFPVHD GATFIP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0086s00060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491769.10.0NAC domain-containing protein 73
SwissprotO494591e-116NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A1S3TDC50.0A0A1S3TDC5_VIGRR; NAC domain-containing protein 73
STRINGGLYMA12G33460.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-106NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]