PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0083s00280.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 612aa    MW: 66711 Da    PI: 6.5958
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0083s00280.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-13438484455
                        HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        +h e+Er+RR+++N++f  Lr+++P+ +      K++Ka+ L  A+ YI++Lq
  Vradi0083s00280.1 438 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAIAYINELQ 484
                        799***********************66......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.6E-5352237IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.301434483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.15E-15437488No hitNo description
SuperFamilySSF474591.83E-18437497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-11438484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-18438497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-17440489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MKVDAGSGRV AWNEEEKAVV GAVLGGRALE FLTTNSVSNE SVLIAVGSDE GLQNKLSDLV  60
ERPNDSNFSW NYAIFWQLSQ SKSGDWVLGW GDGCCREPNE EEEGAVRGKL RLLRVDEEMQ  120
QRMRKGVLQK LHTTFGGSDE DNYAFGLDHV TDTEMFFLAS MYFSFPRGHG GPGKCFVSGK  180
HLWLKSVSDY CVRSSLVKSA GIQTIVMIPT DLGVVELGSV RVLAESSELV QAIKSVFSTQ  240
CPYPGMNVSA SGNAVYTGLA IGDGSKVDGG VPIPKLFANA TGNRTHFREK LAVRKMEDNR  300
PWAGHALPNG NNLNNNPSTM NGLHVPAWAV NSGVRQAGPV EIFASRPSTS SVVAELPNGA  360
RQDFRLGNGY QPQRQVQMQI DFTGATSRPS HVRPVVGGDS ELSDVEASCK EEQASVLDER  420
KPRKRGRKPA NGREEPLNHV EAERQRREKL NQRFYALRSV VPNISKMDKA SLLGDAIAYI  480
NELQAKVKIM EAERERFGST SKDGSVLDAN SRSENKNQEK DAPDVDIQAA QDEITVKVSC  540
PFDTHPVSKV IQTLREAQIS VVESKLAAAN DTVLHTFVIK SQGSEQLTKD KLIAVFSPPE  600
SNPLQPLSSV G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-22482385193Transcription factor MYC3
4rqw_B1e-22482385193Transcription factor MYC3
4rs9_A1e-22482385193Transcription factor MYC3
4yz6_A1e-22482385193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1419427RKPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491620.10.0PREDICTED: transcription factor bHLH13
SwissprotQ9LNJ50.0BH013_ARATH; Transcription factor bHLH13
TrEMBLA0A0S3S4S00.0A0A0S3S4S0_PHAAN; Uncharacterized protein
STRINGGLYMA19G44570.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein