PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0007s01690.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 353aa    MW: 39944.3 Da    PI: 8.6741
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0007s01690.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.56.3e-50131405128
                NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                        +rFhPtdeel+ +yL k+v++ +l++ ++i+evdiyk++PwdLp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++++ 
  Vradi0007s01690.1  13 IRFHPTDEELILHYLSKRVASIPLPV-SIIAEVDIYKLDPWDLPAKATFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVTSl 103
                        79************************.89***************988899****************************************99 PP

                NAM  96 ....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             +e++g+kk Lvfykgr pkg+kt+W+mheyrl
  Vradi0007s01690.1 104 qggsVQENIGVKKALVFYKGRPPKGVKTNWIMHEYRL 140
                        87766667***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100557.6589167IPR003441NAC domain
PfamPF023655.3E-2512140IPR003441NAC domain
SuperFamilySSF1019411.96E-5913167IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEEASICKFE MHIRFHPTDE ELILHYLSKR VASIPLPVSI IAEVDIYKLD PWDLPAKATF  60
GEKEWYFFSP RDRKYPNGAR PNRAAASGYW KATGTDKTIV TSLQGGSVQE NIGVKKALVF  120
YKGRPPKGVK TNWIMHEYRL VDNNKPIKLK DSSMRLDDWV LCRIYKKSKH ALTSTEAGIG  180
VGEVDQAEEQ QFNETLLPIL KSPIPPPPQN SLMSQKSVSF SNLLDAMDYS VLSSFLSENH  240
SNPPGIGSSA GFNVENLEQQ SSPMNNPNNT YTFQKNTQLN PSLSNMENMR PKRQFSSIDD  300
ETLYPSKKYL TSSCNFPSNI NPQYENPQWN YLVKQSLLNQ RLLLGPQLQF QG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-691317121169NO APICAL MERISTEM PROTEIN
1ut4_B7e-691317121169NO APICAL MERISTEM PROTEIN
1ut7_A7e-691317121169NO APICAL MERISTEM PROTEIN
1ut7_B7e-691317121169NO APICAL MERISTEM PROTEIN
3swm_A8e-691317124172NAC domain-containing protein 19
3swm_B8e-691317124172NAC domain-containing protein 19
3swm_C8e-691317124172NAC domain-containing protein 19
3swm_D8e-691317124172NAC domain-containing protein 19
3swp_A8e-691317124172NAC domain-containing protein 19
3swp_B8e-691317124172NAC domain-containing protein 19
3swp_C8e-691317124172NAC domain-containing protein 19
3swp_D8e-691317124172NAC domain-containing protein 19
4dul_A7e-691317121169NAC domain-containing protein 19
4dul_B7e-691317121169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00333DAPTransfer from AT3G04070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0007s01690.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU4403540.0EU440354.1 Glycine max transcriptional factor NAC11 (NAC11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491354.10.0NAC transcription factor 47
SwissprotQ84TD61e-102NAC47_ARATH; NAC transcription factor 47
TrEMBLA0A1S3TC620.0A0A1S3TC62_VIGRR; NAC transcription factor 47
STRINGXP_007161811.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66212750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.19e-99NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]