PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0019s0075.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family C2H2
Protein Properties Length: 445aa    MW: 43904.2 Da    PI: 9.111
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0019s0075.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.2e-05126149123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          + C+ C++sF ++  L+rH +  H
  Vocar.0019s0075.1.p 126 FACSQCDRSFATSQGLMRHNQAkH 149
                          78*****************76555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035527426IPR015880Zinc finger, C2H2-like
SMARTSM003550.0085126149IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.074126154IPR007087Zinc finger, C2H2
PROSITE patternPS000280128149IPR007087Zinc finger, C2H2
PROSITE profilePS501579.099274302IPR007087Zinc finger, C2H2
SMARTSM003550.75274297IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280276297IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MATNLCAECG TRLPRPEYKI HMQQVHGVPV MDDSDDDDQA KTAQGSASAA EGADEAPLQQ  60
RPGRGGGRNN TRREKAGSAA AAATDGDASP VDGDGADAAP RANGSRRRRG GRRPTAGDGK  120
AEGGEFACSQ CDRSFATSQG LMRHNQAKHA ESATAAAAAA VSSAISAPTP VRRGGRQRPT  180
GNDTAAAAEG GSSARSPVEN GDGGPQAAAA AGAPAAAAAA ARQPSRRRPR QPPAAAPPLD  240
PEAAEAAAAA SAAAKAALDG SPAEPKPERF VTLLRCKLCE QGFKSKNRAR SHVGEVHRDA  300
VPPAKNEGTE AAEAKAEGGA VAADELLELV QVPARRAPRA PGRRTRKTRA AAGGPDGEAV  360
AEGGPTDLKG ATRPATGVRR GGRPPKKAAA AAAAAAADEL ALEAPSAPEG VSATVTTAGG  420
GGGGAAATGA VTDELAALGI VSSS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002950211.10.0hypothetical protein VOLCADRAFT_104605
TrEMBLD8TUT80.0D8TUT8_VOLCA; Putative uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1396822